Linus Sandegren

Affiliations

Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.

Publications (20)

Dynamics of Extensive Drug Resistance Evolution of Mycobacterium tuberculosis in a Single Patient During 9 Years of Disease and Treatment.

The Journal of infectious diseases

Avec: Karin Hjort , Pontus Jurén , Juan Carlos Toro , Sven Hoffner , Dan I Andersson , Linus Sandegren

The Role of Antibiotic Resistance Genes in the Fitness Cost of Multiresistance Plasmids.

mBio

Avec: Fredrika Rajer , Linus Sandegren

Modular 3D-Printed Peg Biofilm Device for Flexible Setup of Surface-Related Biofilm Studies.

Frontiers in cellular and infection microbiology

Avec: Greta Zaborskytė , Erik Wistrand-Yuen , Karin Hjort , Dan I Andersson , Linus Sandegren

Cultivation-Free Typing of Bacteria Using Optical DNA Mapping.

ACS infectious diseases

Avec: Vilhelm Müller , My Nyblom , Anna Johnning , Marie Wrande , Albertas Dvirnas , Sriram Kk , Christian G Giske , Tobias Ambjörnsson , Linus Sandegren , Erik Kristiansson , Fredrik Westerlund

Optical DNA Mapping Combined with Cas9-Targeted Resistance Gene Identification for Rapid Tracking of Resistance Plasmids in a Neonatal Intensive Care Unit Outbreak.

mBio

Avec: Santosh K Bikkarolla , Viveka Nordberg , Fredrika Rajer , Vilhelm Müller , Muhammad Humaun Kabir , Sriram Kk , Albertas Dvirnas , Tobias Ambjörnsson , Christian G Giske , Lars Navér , Linus Sandegren , Fredrik Westerlund

Genomically diverse carbapenem resistant Enterobacteriaceae from wild birds provide insight into global patterns of spatiotemporal dissemination.

The Science of the total environment

Avec: Christina A Ahlstrom , Hanna Woksepp , Linus Sandegren , Mashkoor Mohsin , Badrul Hasan , Denys Muzyka , Jorge Hernandez , Filip Aguirre , Atalay Tok , Jan Söderman , Bjorn Olsen , Andrew M Ramey , Jonas Bonnedahl

Strain-level bacterial typing directly from patient samples using optical DNA mapping.

Communications medicine

Avec: My Nyblom , Anna Johnning , Karolin Frykholm , Marie Wrande , Vilhelm Müller , Gaurav Goyal , Miriam Robertsson , Albertas Dvirnas , Tsegaye Sewunet , Sriram Kk , Tobias Ambjörnsson , Christian G Giske , Linus Sandegren , Erik Kristiansson , Fredrik Westerlund

Genome and plasmid diversity of Extended-Spectrum β-Lactamase-producing Escherichia coli ST131 - tracking phylogenetic trajectories with Bayesian inference.

Scientific reports

Avec: Sofia Ny , Linus Sandegren , Marco Salemi , Christian G Giske

Dynamics of Resistance Plasmids in Extended-Spectrum-β-Lactamase-Producing

Antimicrobial agents and chemotherapy

Avec: Alma Brolund , Fredrika Rajer , Christian G Giske , Öjar Melefors , Emilia Titelman , Linus Sandegren

Selection of Resistant Bacteria in Mallards Exposed to Subinhibitory Concentrations of Ciprofloxacin in Their Water Environment.

Antimicrobial agents and chemotherapy

Avec: Clara Atterby , Marie Nykvist , Ulrika Lustig , Dan I Andersson , Josef D Järhult , Linus Sandegren

A simple cut and stretch assay to detect antimicrobial resistance genes on bacterial plasmids by single-molecule fluorescence microscopy.

Scientific reports

Avec: Gaurav Goyal , Elina Ekedahl , My Nyblom , Jens Krog , Erik Fröbrant , Magnus Brander , Tsegaye Sewunet , Teerawit Tangkoskul , Christian G Giske , Linus Sandegren , Visanu Thamlikitkul , Tobias Ambjörnsson , Fredrik Westerlund

A Parallelized Nanofluidic Device for High-Throughput Optical DNA Mapping of Bacterial Plasmids.

Micromachines

Avec: Sriram Kk , Yii-Lih Lin , Tsegaye Sewunet , Marie Wrande , Linus Sandegren , Christian G Giske , Fredrik Westerlund

Evaluation of In Vitro Activity of Double-Carbapenem Combinations against KPC-2-, OXA-48- and NDM-Producing

Antibiotics (Basel, Switzerland)

Avec: Lisa Allander , Karin Vickberg , Pernilla Lagerbäck , Linus Sandegren , Thomas Tängdén

Exchange of Carbapenem-Resistant Escherichia coli Sequence Type 38 Intercontinentally and among Wild Bird, Human, and Environmental Niches.

Applied and environmental microbiology

Avec: Christina A Ahlstrom , Hanna Woksepp , Linus Sandegren , Andrew M Ramey , Jonas Bonnedahl

Impact of porin deficiency on the synergistic potential of colistin in combination with β-lactam/β-lactamase inhibitors against ESBL- and carbapenemase-producing

Antimicrobial agents and chemotherapy

Avec: Lisa Allander , Karin Vickberg , Elin Fermér , Thomas Söderhäll , Linus Sandegren , Pernilla Lagerbäck , Thomas Tängdén

Efficacy of Antibiotic Combinations against Multidrug-Resistant Pseudomonas aeruginosa in Automated Time-Lapse Microscopy and Static Time-Kill Experiments.

Antimicrobial agents and chemotherapy

Avec: Anna Olsson , Pikkei Wistrand-Yuen , Elisabet I Nielsen , Lena E Friberg , Linus Sandegren , Pernilla Lagerbäck , Thomas Tängdén

Detection of structural variations in densely-labelled optical DNA barcodes: A hidden Markov model approach.

PloS one

Avec: Albertas Dvirnas , Callum Stewart , Vilhelm Müller , Santosh Kumar Bikkarolla , Karolin Frykholm , Linus Sandegren , Erik Kristiansson , Fredrik Westerlund , Tobias Ambjörnsson

Metallo-β-Lactamase Inhibitor Phosphonamidate Monoesters.

ACS omega

Avec: Katarzyna Palica , Manuela Vorácová , Susann Skagseth , Anna Andersson Rasmussen , Lisa Allander , Madlen Hubert , Linus Sandegren , Hanna-Kirstirep Schrøder Leiros , Hanna Andersson , Máté Erdélyi

Evolutionary Trajectories toward High-Level β-Lactam/β-Lactamase Inhibitor Resistance in the Presence of Multiple β-Lactamases.

Antimicrobial agents and chemotherapy

Avec: Fredrika Rajer , Lisa Allander , Philip A Karlsson , Linus Sandegren

Molecular characteristics, fitness, and virulence of high-risk and non-high-risk clones of carbapenemase-producing

Microbiology spectrum

Avec: Anni-Maria Örmälä-Tiznado , Lisa Allander , Makaoui Maatallah , Muhammad Humaun Kabir , Sylvain Brisse , Linus Sandegren , Sheetal Patpatia , Maarten Coorens , Christian G Giske

Réseau de co-auteurs

Christian G Giske 8 collaborations

Fredrik Westerlund 6 collaborations

Tobias Ambjörnsson 5 collaborations

Lisa Allander 5 collaborations

Fredrika Rajer 4 collaborations

Vilhelm Müller 4 collaborations

Albertas Dvirnas 4 collaborations

Sriram Kk 4 collaborations

Dan I Andersson 3 collaborations

My Nyblom 3 collaborations

Marie Wrande 3 collaborations

Erik Kristiansson 3 collaborations

Tsegaye Sewunet 3 collaborations

Pernilla Lagerbäck 3 collaborations

Thomas Tängdén 3 collaborations

Karin Hjort 2 collaborations

Anna Johnning 2 collaborations

Muhammad Humaun Kabir 2 collaborations

Christina A Ahlstrom 2 collaborations

Hanna Woksepp 2 collaborations

Andrew M Ramey 2 collaborations

Jonas Bonnedahl 2 collaborations

Karolin Frykholm 2 collaborations

Gaurav Goyal 2 collaborations

Karin Vickberg 2 collaborations

Pontus Jurén 1 collaboration

Juan Carlos Toro 1 collaboration

Sven Hoffner 1 collaboration

Greta Zaborskytė 1 collaboration

Erik Wistrand-Yuen 1 collaboration

Santosh K Bikkarolla 1 collaboration

Viveka Nordberg 1 collaboration

Lars Navér 1 collaboration

Mashkoor Mohsin 1 collaboration

Badrul Hasan 1 collaboration

Denys Muzyka 1 collaboration

Jorge Hernandez 1 collaboration

Filip Aguirre 1 collaboration

Atalay Tok 1 collaboration

Jan Söderman 1 collaboration

Bjorn Olsen 1 collaboration

Miriam Robertsson 1 collaboration

Sofia Ny 1 collaboration

Marco Salemi 1 collaboration

Alma Brolund 1 collaboration

Öjar Melefors 1 collaboration

Emilia Titelman 1 collaboration

Clara Atterby 1 collaboration

Marie Nykvist 1 collaboration

Ulrika Lustig 1 collaboration

Josef D Järhult 1 collaboration

Elina Ekedahl 1 collaboration

Jens Krog 1 collaboration

Erik Fröbrant 1 collaboration

Magnus Brander 1 collaboration

Teerawit Tangkoskul 1 collaboration

Visanu Thamlikitkul 1 collaboration

Yii-Lih Lin 1 collaboration

Elin Fermér 1 collaboration

Thomas Söderhäll 1 collaboration

Anna Olsson 1 collaboration

Pikkei Wistrand-Yuen 1 collaboration

Elisabet I Nielsen 1 collaboration

Lena E Friberg 1 collaboration

Callum Stewart 1 collaboration

Santosh Kumar Bikkarolla 1 collaboration

Katarzyna Palica 1 collaboration

Manuela Vorácová 1 collaboration

Susann Skagseth 1 collaboration

Anna Andersson Rasmussen 1 collaboration

Madlen Hubert 1 collaboration

Hanna-Kirstirep Schrøder Leiros 1 collaboration

Hanna Andersson 1 collaboration

Máté Erdélyi 1 collaboration

Philip A Karlsson 1 collaboration

Anni-Maria Örmälä-Tiznado 1 collaboration

Makaoui Maatallah 1 collaboration

Sylvain Brisse 1 collaboration

Sheetal Patpatia 1 collaboration

Maarten Coorens 1 collaboration