M Fratello

Affiliations

FHAIVE, Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland.

Publications (23)

Strong-Weak Pruning for Brain Network Identification in Connectome-Wide Neuroimaging: Application to Amyotrophic Lateral Sclerosis Disease Stage Characterization.

International journal of neural systems

Avec: Angela Serra , Paola Galdi , Emanuele Pesce , Michele Fratello , Francesca Trojsi , Gioacchino Tedeschi , Roberto Tagliaferri , Fabrizio Esposito

Biomarkers of nanomaterials hazard from multi-layer data.

Nature communications

Avec: Vittorio Fortino , Pia Anneli Sofia Kinaret , Michele Fratello , Angela Serra , Laura Aliisa Saarimäki , Audrey Gallud , Govind Gupta , Gerard Vales , Manuel Correia , Omid Rasool , Jimmy Ytterberg , Marco Monopoli , Tiina Skoog , Peter Ritchie , Sergio Moya , Socorro Vázquez-Campos , Richard Handy , Roland Grafström , Lang Tran , Roman Zubarev , Riitta Lahesmaa , Kenneth Dawson , Katrin Loeschner , Erik Husfeldt Larsen , Fritz Krombach , Hannu Norppa , Juha Kere , Kai Savolainen , Harri Alenius , Bengt Fadeel , Dario Greco

ESPERANTO: a GLP-field sEmi-SuPERvised toxicogenomics metadAta curatioN TOol.

Bioinformatics (Oxford, England)

Avec: Emanuele Di Lieto , Angela Serra , Simo Iisakki Inkala , Laura Aliisa Saarimäki , Giusy Del Giudice , Michele Fratello , Veera Hautanen , Maria Annala , Antonio Federico , Dario Greco

A low-cost open-architecture taste delivery system for gustatory fMRI and BCI experiments.

Journal of neuroscience methods

Avec: Antonietta Canna , Anna Prinster , Michele Fratello , Luca Puglia , Mario Magliulo , Elena Cantone , Maria Agnese Pirozzi , Francesco Di Salle , Fabrizio Esposito

Toxicogenomics Data for Chemical Safety Assessment and Development of New Approach Methodologies: An Adverse Outcome Pathway-Based Approach.

Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Avec: Laura Aliisa Saarimäki , Jack Morikka , Alisa Pavel , Seela Korpilähde , Giusy Del Giudice , Antonio Federico , Michele Fratello , Angela Serra , Dario Greco

DREAM: an R package for druggability evaluation of human complex diseases.

Bioinformatics (Oxford, England)

Avec: Antonio Federico , Michele Fratello , Alisa Pavel , Lena Möbus , Giusy Del Giudice , Angela Serra , Dario Greco

Transcriptomics in Toxicogenomics, Part I: Experimental Design, Technologies, Publicly Available Data, and Regulatory Aspects.

Nanomaterials (Basel, Switzerland)

Avec: Pia Anneli Sofia Kinaret , Angela Serra , Antonio Federico , Pekka Kohonen , Penny Nymark , Irene Liampa , My Kieu Ha , Jang-Sik Choi , Karolina Jagiello , Natasha Sanabria , Georgia Melagraki , Luca Cattelani , Michele Fratello , Haralambos Sarimveis , Antreas Afantitis , Tae-Hyun Yoon , Mary Gulumian , Roland Grafström , Tomasz Puzyn , Dario Greco

Unsupervised Algorithms for Microarray Sample Stratification.

Methods in molecular biology (Clifton, N.J.)

Avec: Michele Fratello , Luca Cattelani , Antonio Federico , Alisa Pavel , Giovanni Scala , Angela Serra , Dario Greco

BMDx: a graphical Shiny application to perform Benchmark Dose analysis for transcriptomics data.

Bioinformatics (Oxford, England)

Avec: Angela Serra , Laura Aliisa Saarimäki , Michele Fratello , Veer Singh Marwah , Dario Greco

Integrated Network Pharmacology Approach for Drug Combination Discovery: A Multi-Cancer Case Study.

Cancers

Avec: Antonio Federico , Michele Fratello , Giovanni Scala , Lena Möbus , Alisa Pavel , Giusy Del Giudice , Michele Ceccarelli , Valerio Costa , Alfredo Ciccodicola , Vittorio Fortino , Angela Serra , Dario Greco

Transcriptomics in Toxicogenomics, Part II: Preprocessing and Differential Expression Analysis for High Quality Data.

Nanomaterials (Basel, Switzerland)

Avec: Antonio Federico , Angela Serra , My Kieu Ha , Pekka Kohonen , Jang-Sik Choi , Irene Liampa , Penny Nymark , Natasha Sanabria , Luca Cattelani , Michele Fratello , Pia Anneli Sofia Kinaret , Karolina Jagiello , Tomasz Puzyn , Georgia Melagraki , Mary Gulumian , Antreas Afantitis , Haralambos Sarimveis , Tae-Hyun Yoon , Roland Grafström , Dario Greco

Advances in de Novo Drug Design: From Conventional to Machine Learning Methods.

International journal of molecular sciences

Avec: Varnavas D Mouchlis , Antreas Afantitis , Angela Serra , Michele Fratello , Anastasios G Papadiamantis , Vassilis Aidinis , Iseult Lynch , Dario Greco , Georgia Melagraki

Transcriptomics in Toxicogenomics, Part III: Data Modelling for Risk Assessment.

Nanomaterials (Basel, Switzerland)

Avec: Angela Serra , Michele Fratello , Luca Cattelani , Irene Liampa , Georgia Melagraki , Pekka Kohonen , Penny Nymark , Antonio Federico , Pia Anneli Sofia Kinaret , Karolina Jagiello , My Kieu Ha , Jang-Sik Choi , Natasha Sanabria , Mary Gulumian , Tomasz Puzyn , Tae-Hyun Yoon , Haralambos Sarimveis , Roland Grafström , Antreas Afantitis , Dario Greco

Supervised Methods for Biomarker Detection from Microarray Experiments.

Methods in molecular biology (Clifton, N.J.)

Avec: Angela Serra , Luca Cattelani , Michele Fratello , Vittorio Fortino , Pia Anneli Sofia Kinaret , Dario Greco

An ancestral molecular response to nanomaterial particulates.

Nature nanotechnology

Avec: G Del Giudice , A Serra , L A Saarimäki , K Kotsis , I Rouse , S A Colibaba , K Jagiello , A Mikolajczyk , M Fratello , A G Papadiamantis , N Sanabria , M E Annala , J Morikka , P A S Kinaret , E Voyiatzis , G Melagraki , A Afantitis , K Tämm , T Puzyn , M Gulumian , V Lobaskin , I Lynch , A Federico , D Greco

A curated gene and biological system annotation of adverse outcome pathways related to human health.

Scientific data

Avec: Laura Aliisa Saarimäki , Michele Fratello , Alisa Pavel , Seela Korpilähde , Jenni Leppänen , Angela Serra , Dario Greco

A Multi-Dimensional Approach to Map Disease Relationships Challenges Classical Disease Views.

Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Avec: Lena Möbus , Angela Serra , Michele Fratello , Alisa Pavel , Antonio Federico , Dario Greco

Stochastic Rank Aggregation for the Identification of Functional Neuromarkers.

Neuroinformatics

Avec: Paola Galdi , Michele Fratello , Francesca Trojsi , Antonio Russo , Gioacchino Tedeschi , Roberto Tagliaferri , Fabrizio Esposito

TinderMIX: Time-dose integrated modelling of toxicogenomics data.

GigaScience

Avec: Angela Serra , Michele Fratello , Giusy Del Giudice , Laura Aliisa Saarimäki , Michelangelo Paci , Antonio Federico , Dario Greco

Nextcast: A software suite to analyse and model toxicogenomics data.

Computational and structural biotechnology journal

Avec: Angela Serra , Laura Aliisa Saarimäki , Alisa Pavel , Giusy Del Giudice , Michele Fratello , Luca Cattelani , Antonio Federico , Omar Laurino , Veer Singh Marwah , Vittorio Fortino , Giovanni Scala , Pia Anneli Sofia Kinaret , Dario Greco

Computationally prioritized drugs inhibit SARS-CoV-2 infection and syncytia formation.

Briefings in bioinformatics

Avec: Angela Serra , Michele Fratello , Antonio Federico , Ravi Ojha , Riccardo Provenzani , Ervin Tasnadi , Luca Cattelani , Giusy Del Giudice , Pia A S Kinaret , Laura A Saarimäki , Alisa Pavel , Suvi Kuivanen , Vincenzo Cerullo , Olli Vapalahti , Peter Horvath , Antonio Di Lieto , Jari Yli-Kauhaluoma , Giuseppe Balistreri , Dario Greco

KNeMAP: a network mapping approach for knowledge-driven comparison of transcriptomic profiles.

Bioinformatics (Oxford, England)

Avec: Alisa Pavel , Giusy Del Giudice , Michele Fratello , Leo Ghemtio , Antonio Di Lieto , Jari Yli-Kauhaluoma , Henri Xhaard , Antonio Federico , Angela Serra , Dario Greco

A Network Toxicology Approach for Mechanistic Modelling of Nanomaterial Hazard and Adverse Outcomes.

Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Avec: Giusy Del Giudice , Angela Serra , Alisa Pavel , Marcella Torres Maia , Laura Aliisa Saarimäki , Michele Fratello , Antonio Federico , Harri Alenius , Bengt Fadeel , Dario Greco

Réseau de co-auteurs

Michele Fratello 22 collaborations

Angela Serra 20 collaborations

Dario Greco 19 collaborations

Antonio Federico 14 collaborations

Alisa Pavel 10 collaborations

Giusy Del Giudice 9 collaborations

Laura Aliisa Saarimäki 8 collaborations

Luca Cattelani 7 collaborations

Pia Anneli Sofia Kinaret 6 collaborations

Vittorio Fortino 4 collaborations

Roland Grafström 4 collaborations

Georgia Melagraki 4 collaborations

Antreas Afantitis 4 collaborations

Fabrizio Esposito 3 collaborations

Lena Möbus 3 collaborations

Pekka Kohonen 3 collaborations

Penny Nymark 3 collaborations

Irene Liampa 3 collaborations

My Kieu Ha 3 collaborations

Jang-Sik Choi 3 collaborations

Karolina Jagiello 3 collaborations

Natasha Sanabria 3 collaborations

Haralambos Sarimveis 3 collaborations

Tae-Hyun Yoon 3 collaborations

Mary Gulumian 3 collaborations

Tomasz Puzyn 3 collaborations

Giovanni Scala 3 collaborations

Paola Galdi 2 collaborations

Francesca Trojsi 2 collaborations

Gioacchino Tedeschi 2 collaborations

Roberto Tagliaferri 2 collaborations

Harri Alenius 2 collaborations

Bengt Fadeel 2 collaborations

Seela Korpilähde 2 collaborations

Veer Singh Marwah 2 collaborations

Antonio Di Lieto 2 collaborations

Jari Yli-Kauhaluoma 2 collaborations

Emanuele Pesce 1 collaboration

Audrey Gallud 1 collaboration

Govind Gupta 1 collaboration

Gerard Vales 1 collaboration

Manuel Correia 1 collaboration

Omid Rasool 1 collaboration

Jimmy Ytterberg 1 collaboration

Marco Monopoli 1 collaboration

Tiina Skoog 1 collaboration

Peter Ritchie 1 collaboration

Sergio Moya 1 collaboration

Socorro Vázquez-Campos 1 collaboration

Richard Handy 1 collaboration

Lang Tran 1 collaboration

Roman Zubarev 1 collaboration

Riitta Lahesmaa 1 collaboration

Kenneth Dawson 1 collaboration

Katrin Loeschner 1 collaboration

Erik Husfeldt Larsen 1 collaboration

Fritz Krombach 1 collaboration

Hannu Norppa 1 collaboration

Juha Kere 1 collaboration

Kai Savolainen 1 collaboration

Emanuele Di Lieto 1 collaboration

Simo Iisakki Inkala 1 collaboration

Veera Hautanen 1 collaboration

Maria Annala 1 collaboration

Antonietta Canna 1 collaboration

Anna Prinster 1 collaboration

Luca Puglia 1 collaboration

Mario Magliulo 1 collaboration

Elena Cantone 1 collaboration

Maria Agnese Pirozzi 1 collaboration

Francesco Di Salle 1 collaboration

Jack Morikka 1 collaboration

Michele Ceccarelli 1 collaboration

Valerio Costa 1 collaboration

Alfredo Ciccodicola 1 collaboration

Varnavas D Mouchlis 1 collaboration

Anastasios G Papadiamantis 1 collaboration

Vassilis Aidinis 1 collaboration

Iseult Lynch 1 collaboration

G Del Giudice 1 collaboration

A Serra 1 collaboration

L A Saarimäki 1 collaboration

K Kotsis 1 collaboration

I Rouse 1 collaboration

S A Colibaba 1 collaboration

K Jagiello 1 collaboration

A Mikolajczyk 1 collaboration

A G Papadiamantis 1 collaboration

N Sanabria 1 collaboration

M E Annala 1 collaboration

J Morikka 1 collaboration

P A S Kinaret 1 collaboration

E Voyiatzis 1 collaboration

G Melagraki 1 collaboration

A Afantitis 1 collaboration

K Tämm 1 collaboration

T Puzyn 1 collaboration

M Gulumian 1 collaboration

V Lobaskin 1 collaboration

I Lynch 1 collaboration

A Federico 1 collaboration

D Greco 1 collaboration

Jenni Leppänen 1 collaboration

Antonio Russo 1 collaboration

Michelangelo Paci 1 collaboration

Omar Laurino 1 collaboration

Ravi Ojha 1 collaboration

Riccardo Provenzani 1 collaboration

Ervin Tasnadi 1 collaboration

Pia A S Kinaret 1 collaboration

Laura A Saarimäki 1 collaboration

Suvi Kuivanen 1 collaboration

Vincenzo Cerullo 1 collaboration

Olli Vapalahti 1 collaboration

Peter Horvath 1 collaboration

Giuseppe Balistreri 1 collaboration

Leo Ghemtio 1 collaboration

Henri Xhaard 1 collaboration

Marcella Torres Maia 1 collaboration