M Ghafari

Affiliations

Department of Biology, University of Oxford, Oxford, OX1, UK.

Publications (22)

The expected time to cross extended fitness plateaus.

Theoretical population biology

Avec: Mahan Ghafari , Daniel B Weissman

Purifying Selection Determines the Short-Term Time Dependency of Evolutionary Rates in SARS-CoV-2 and pH1N1 Influenza.

Molecular biology and evolution

Avec: Mahan Ghafari , Louis du Plessis , Jayna Raghwani , Samir Bhatt , Bo Xu , Oliver G Pybus , Aris Katzourakis

The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2.

bioRxiv : the preprint server for biology

Avec: Jonathan E Pekar , Spyros Lytras , Mahan Ghafari , Andrew F Magee , Edyth Parker , Jennifer L Havens , Aris Katzourakis , Tetyana I Vasylyeva , Marc A Suchard , Alice C Hughes , Joseph Hughes , David L Robertson , Simon Dellicour , Michael Worobey , Joel O Wertheim , Philippe Lemey

Inferring Transmission Bottleneck Size from Viral Sequence Data Using a Novel Haplotype Reconstruction Method.

Journal of virology

Avec: Mahan Ghafari , Casper K Lumby , Daniel B Weissman , Christopher J R Illingworth

Phenol adsorption and desorption with physically and chemically tailored porous polymers: Mechanistic variability associated with hyper-cross-linking and amination.

Journal of hazardous materials

Avec: Mohsen Ghafari , Yanbin Cui , Abdulrhman Alali , John D Atkinson

Complementary performances of convolutional and capsule neural networks on classifying microfluidic images of dividing yeast cells.

PloS one

Avec: Mehran Ghafari , Justin Clark , Hao-Bo Guo , Ruofan Yu , Yu Sun , Weiwei Dang , Hong Qin

Excess deaths associated with the Iranian COVID-19 epidemic: A province-level analysis.

International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases

Avec: Mahan Ghafari , Alireza Kadivar , Aris Katzourakis

Engaging Religious Institutions and Faith-Based Communities in Public Health Initiatives: A Case Study of the Romanian Orthodox Church During the COVID-19 Pandemic.

Frontiers in public health

Avec: Stefan Dascalu , Patrik G Flammer , Mahan Ghafari , Shaun C Henson , Roger Nascimento , Michael B Bonsall

The evolutionary history of hepaciviruses.

bioRxiv : the preprint server for biology

Avec: Y Q Li , M Ghafari , A J Holbrook , I Boonen , N Amor , S Catalano , J P Webster , Y Y Li , H T Li , V Vergote , P Maes , Y L Chong , A Laudisoit , P Baelo , S Ngoy , S G Mbalitini , G C Gembu , Akawa P Musaba , J Goüy de Bellocq , H Leirs , E Verheyen , O G Pybus , A Katzourakis , A N Alagaili , S Gryseels , Y C Li , M A Suchard , M Bletsa , P Lemey

Revisiting the origins of the Sobemovirus genus: A case for ancient origins of plant viruses.

PLoS pathogens

Avec: Mahan Ghafari , Merike Sõmera , Cecilia Sarmiento , Annette Niehl , Eugénie Hébrard , Theocharis Tsoleridis , Jonathan Ball , Benoît Moury , Philippe Lemey , Aris Katzourakis , Denis Fargette

Prevalence of persistent SARS-CoV-2 in a large community surveillance study.

Nature

Avec: Mahan Ghafari , Matthew Hall , Tanya Golubchik , Daniel Ayoubkhani , Thomas House , George MacIntyre-Cockett , Helen R Fryer , Laura Thomson , Anel Nurtay , Steven A Kemp , Luca Ferretti , David Buck , Angie Green , Amy Trebes , Paolo Piazza , Lorne J Lonie , Ruth Studley , Emma Rourke , Darren L Smith , Matthew Bashton , Andrew Nelson , Matthew Crown , Clare McCann , Gregory R Young , Rui Andre Nunes Dos Santos , Zack Richards , Mohammad Adnan Tariq , Roberto Cahuantzi , Auteur inconnu , Auteur inconnu , Auteur inconnu , Jeff Barrett , Christophe Fraser , David Bonsall , Ann Sarah Walker , Katrina Lythgoe

Modifying the transition temperature, 120 K ≤ T

Scientific reports

Avec: Y N Fang , H Hahn , S Kobe , R Witte , S P Singh , T Feng , M Ghafari

Effect of Palliative Care on Quality of Life and Survival after Cardiopulmonary Resuscitation: A Systematic Review.

International journal of preventive medicine

Avec: Ali Hasanpour Dehkordi , Diana Sarokhani , Mahin Ghafari , Mohsen Mikelani , Leila Mahmoodnia

A mechanistic evolutionary model explains the time-dependent pattern of substitution rates in viruses.

Current biology : CB

Avec: Mahan Ghafari , Peter Simmonds , Oliver G Pybus , Aris Katzourakis

The association of professionalism and systems thinking on patient safety competency: A structural equation model.

Journal of nursing management

Avec: Edris Kakemam , Masoud Ghafari , Mahtab Rouzbahani , Hamideh Zahedi , Young Sook Roh

Protein interaction potential landscapes for yeast replicative aging.

Scientific reports

Avec: Hao-Bo Guo , Mehran Ghafari , Weiwei Dang , Hong Qin

Estimating the false-negative test probability of SARS-CoV-2 by RT-PCR.

Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin

Avec: Paul S Wikramaratna , Robert S Paton , Mahan Ghafari , José Lourenço

Patient safety culture in Iranian teaching hospitals: baseline assessment, opportunities for improvement and benchmarking.

BMC health services research

Avec: Edris Kakemam , Ahmed Hassan Albelbeisi , Samane Davoodabadi , Masoud Ghafari , Zahra Dehghandar , Pouran Raeissi

Global prevalence of unmet need for mental health care among adolescents: A systematic review and meta-analysis.

Archives of psychiatric nursing

Avec: Mahin Ghafari , Tayebeh Nadi , Samira Bahadivand-Chegini , Amin Doosti-Irani

Lessons for preparedness and reasons for concern from the early COVID-19 epidemic in Iran.

Epidemics

Avec: Mahan Ghafari , Bardia Hejazi , Arman Karshenas , Stefan Dascalu , Alireza Kadvidar , Mohammad A Khosravi , Maryam Abbasalipour , Majid Heydari , Sirous Zeinali , Luca Ferretti , Alice Ledda , Aris Katzourakis

Estimating SARS-CoV-2 variant fitness and the impact of interventions in England using statistical and geo-spatial agent-based models.

Philosophical transactions. Series A, Mathematical, physical, and engineering sciences

Avec: Robert Hinch , Jasmina Panovska-Griffiths , William J M Probert , Luca Ferretti , Chris Wymant , Francesco Di Lauro , Nikolas Baya , Mahan Ghafari , Lucie Abeler-Dörner , Auteur inconnu , Christophe Fraser

A quantitative evaluation of the impact of vaccine roll-out rate and coverage on reducing deaths: insights from the first 2 years of COVID-19 epidemic in Iran.

BMC medicine

Avec: Mahan Ghafari , Sepanta Hosseinpour , Mohammad Saeid Rezaee-Zavareh , Stefan Dascalu , Somayeh Rostamian , Kiarash Aramesh , Kaveh Madani , Shahram Kordasti

Réseau de co-auteurs

Mahan Ghafari 13 collaborations

Aris Katzourakis 6 collaborations

None None 4 collaborations

Stefan Dascalu 3 collaborations

Luca Ferretti 3 collaborations

Daniel B Weissman 2 collaborations

Oliver G Pybus 2 collaborations

Philippe Lemey 2 collaborations

Mehran Ghafari 2 collaborations

Hao-Bo Guo 2 collaborations

Weiwei Dang 2 collaborations

Hong Qin 2 collaborations

Christophe Fraser 2 collaborations

Mahin Ghafari 2 collaborations

Edris Kakemam 2 collaborations

Masoud Ghafari 2 collaborations

Louis du Plessis 1 collaboration

Jayna Raghwani 1 collaboration

Samir Bhatt 1 collaboration

Bo Xu 1 collaboration

Jonathan E Pekar 1 collaboration

Spyros Lytras 1 collaboration

Andrew F Magee 1 collaboration

Edyth Parker 1 collaboration

Jennifer L Havens 1 collaboration

Tetyana I Vasylyeva 1 collaboration

Marc A Suchard 1 collaboration

Alice C Hughes 1 collaboration

Joseph Hughes 1 collaboration

David L Robertson 1 collaboration

Simon Dellicour 1 collaboration

Michael Worobey 1 collaboration

Joel O Wertheim 1 collaboration

Casper K Lumby 1 collaboration

Christopher J R Illingworth 1 collaboration

Mohsen Ghafari 1 collaboration

Yanbin Cui 1 collaboration

Abdulrhman Alali 1 collaboration

John D Atkinson 1 collaboration

Justin Clark 1 collaboration

Ruofan Yu 1 collaboration

Yu Sun 1 collaboration

Alireza Kadivar 1 collaboration

Patrik G Flammer 1 collaboration

Shaun C Henson 1 collaboration

Roger Nascimento 1 collaboration

Michael B Bonsall 1 collaboration

Y Q Li 1 collaboration

A J Holbrook 1 collaboration

I Boonen 1 collaboration

N Amor 1 collaboration

S Catalano 1 collaboration

J P Webster 1 collaboration

Y Y Li 1 collaboration

H T Li 1 collaboration

V Vergote 1 collaboration

P Maes 1 collaboration

Y L Chong 1 collaboration

A Laudisoit 1 collaboration

P Baelo 1 collaboration

S Ngoy 1 collaboration

S G Mbalitini 1 collaboration

G C Gembu 1 collaboration

Akawa P Musaba 1 collaboration

J Goüy de Bellocq 1 collaboration

H Leirs 1 collaboration

E Verheyen 1 collaboration

O G Pybus 1 collaboration

A Katzourakis 1 collaboration

A N Alagaili 1 collaboration

S Gryseels 1 collaboration

Y C Li 1 collaboration

M A Suchard 1 collaboration

M Bletsa 1 collaboration

P Lemey 1 collaboration

Merike Sõmera 1 collaboration

Cecilia Sarmiento 1 collaboration

Annette Niehl 1 collaboration

Eugénie Hébrard 1 collaboration

Theocharis Tsoleridis 1 collaboration

Jonathan Ball 1 collaboration

Benoît Moury 1 collaboration

Denis Fargette 1 collaboration

Matthew Hall 1 collaboration

Tanya Golubchik 1 collaboration

Daniel Ayoubkhani 1 collaboration

Thomas House 1 collaboration

George MacIntyre-Cockett 1 collaboration

Helen R Fryer 1 collaboration

Laura Thomson 1 collaboration

Anel Nurtay 1 collaboration

Steven A Kemp 1 collaboration

David Buck 1 collaboration

Angie Green 1 collaboration

Amy Trebes 1 collaboration

Paolo Piazza 1 collaboration

Lorne J Lonie 1 collaboration

Ruth Studley 1 collaboration

Emma Rourke 1 collaboration

Darren L Smith 1 collaboration

Matthew Bashton 1 collaboration

Andrew Nelson 1 collaboration

Matthew Crown 1 collaboration

Clare McCann 1 collaboration

Gregory R Young 1 collaboration

Rui Andre Nunes Dos Santos 1 collaboration

Zack Richards 1 collaboration

Mohammad Adnan Tariq 1 collaboration

Roberto Cahuantzi 1 collaboration

Jeff Barrett 1 collaboration

David Bonsall 1 collaboration

Ann Sarah Walker 1 collaboration

Katrina Lythgoe 1 collaboration

Y N Fang 1 collaboration

H Hahn 1 collaboration

S Kobe 1 collaboration

R Witte 1 collaboration

S P Singh 1 collaboration

T Feng 1 collaboration

Ali Hasanpour Dehkordi 1 collaboration

Diana Sarokhani 1 collaboration

Mohsen Mikelani 1 collaboration

Leila Mahmoodnia 1 collaboration

Peter Simmonds 1 collaboration

Mahtab Rouzbahani 1 collaboration

Hamideh Zahedi 1 collaboration

Young Sook Roh 1 collaboration

Paul S Wikramaratna 1 collaboration

Robert S Paton 1 collaboration

José Lourenço 1 collaboration

Ahmed Hassan Albelbeisi 1 collaboration

Samane Davoodabadi 1 collaboration

Zahra Dehghandar 1 collaboration

Pouran Raeissi 1 collaboration

Tayebeh Nadi 1 collaboration

Samira Bahadivand-Chegini 1 collaboration

Amin Doosti-Irani 1 collaboration

Bardia Hejazi 1 collaboration

Arman Karshenas 1 collaboration

Alireza Kadvidar 1 collaboration

Mohammad A Khosravi 1 collaboration

Maryam Abbasalipour 1 collaboration

Majid Heydari 1 collaboration

Sirous Zeinali 1 collaboration

Alice Ledda 1 collaboration

Robert Hinch 1 collaboration

Jasmina Panovska-Griffiths 1 collaboration

William J M Probert 1 collaboration

Chris Wymant 1 collaboration

Francesco Di Lauro 1 collaboration

Nikolas Baya 1 collaboration

Lucie Abeler-Dörner 1 collaboration

Sepanta Hosseinpour 1 collaboration

Mohammad Saeid Rezaee-Zavareh 1 collaboration

Somayeh Rostamian 1 collaboration

Kiarash Aramesh 1 collaboration

Kaveh Madani 1 collaboration

Shahram Kordasti 1 collaboration