Majid Vahed

Affiliations

Division of Pulmonary, Allergy, Critical Care and Sleep Medicine, University of Miami Miller School of Medicine, Miami, FL 33146, USA.

Publications (19)

DIpartite: A tool for detecting bipartite motifs by considering base interdependencies.

PloS one

Avec: Mohammad Vahed , Jun-Ichi Ishihara , Hiroki Takahashi

Molecular dynamics simulation and experimental study of the surface-display of SPA protein via Lpp-OmpA system for screening of IgG.

AMB Express

Avec: M Vahed , F Ramezani , V Tafakori , V S Mirbagheri , A Najafi , G Ahmadian

Structural Analysis of the Novel Variants of SARS-CoV-2 and Forecasting in North America.

Viruses

Avec: Elena Quinonez , Majid Vahed , Abdolrazagh Hashemi Shahraki , Mehdi Mirsaeidi

Genome sequencing of

Microbiology resource announcements

Avec: Abdolrazagh Hashemi Shahraki , Majid Vahed , Mehdi Mirsaeidi

pyTCR: A comprehensive and scalable solution for TCR-Seq data analysis to facilitate reproducibility and rigor of immunogenomics research.

Frontiers in immunology

Avec: Kerui Peng , Jaden Moore , Mohammad Vahed , Jaqueline Brito , Guoyun Kao , Amanda M Burkhardt , Houda Alachkar , Serghei Mangul

The initial stage of structural transformation of Aβ

Computational biology and chemistry

Avec: Mohammad Vahed , Aaron Sweeney , Hiroshi Shirasawa , Majid Vahed

A Geospatial database of gastric cancer patients and associated potential risk factors including lifestyle and air pollution.

BMC research notes

Avec: Fatemeh Hashemi Amin , Mahtab Ghaemi , Sayyed Mostafa Mostafavi , Ladan Goshayeshi , Khadijeh Rezaei , Mehdi Vahed , Behzad Kiani

BML: a versatile web server for bipartite motif discovery.

Briefings in bioinformatics

Avec: Mohammad Vahed , Majid Vahed , Lana X Garmire

Complete Genome Sequencing of the Novel Pseudomonas aeruginosa Phage UF_RH1.

Microbiology resource announcements

Avec: Abdolrazagh Hashemi Shahraki , Majid Vahed , Mehdi Mirsaeidi

Complete Genome Sequence of Pseudomonas aeruginosa Phage UF_RH6, Isolated from Human Lung.

Microbiology resource announcements

Avec: Abdolrazagh Hashemi Shahraki , Majid Vahed , Shahla Masood , Mehdi Mirsaeidi

Rigorous benchmarking of T-cell receptor repertoire profiling methods for cancer RNA sequencing.

Briefings in bioinformatics

Avec: Kerui Peng , Theodore S Nowicki , Katie Campbell , Mohammad Vahed , Dandan Peng , Yiting Meng , Anish Nagareddy , Yu-Ning Huang , Aaron Karlsberg , Zachary Miller , Jaqueline Brito , Brian Nadel , Victoria M Pak , Malak S Abedalthagafi , Amanda M Burkhardt , Houda Alachkar , Antoni Ribas , Serghei Mangul

T-Ridership: A web tool for reprogramming public transportation fleets to minimize COVID-19 transmission.

SoftwareX

Avec: Saba Imani , Majid Vahed , Shreya Satodia , Mohammad Vahed

Complete Genome Sequencing of a Novel Pseudomonas aeruginosa Phage, UF_RH5.

Microbiology resource announcements

Avec: Abdolrazagh Hashemi Shahraki , Majid Vahed , Roshan Dinparastisaleh , Mehdi Mirsaeidi

G-rich VEGF aptamer as a potential inhibitor of chitin trafficking signal in emerging opportunistic yeast infection.

Computational biology and chemistry

Avec: Mohammad Vahed , Gholamreza Ahmadian , Niyoosha Ameri , Majid Vahed

Molecular and Seroepidemiological Survey of Visceral Leishmaniasis in Owned Dogs (

Journal of arthropod-borne diseases

Avec: Aliehsan Heidari , Mehdi Mohebali , Mozhgan Vahed , Kourosh Kabir , Zabihollah Zarei , Behnaz Akhoundi , Samira Elikaee , Hojatallah Barati , Monireh Sezavar , Hossein Keshavarz , Zahra Kakooei , Homa Hajjaran

Optimization of expression, purification and secretion of functional recombinant human growth hormone in Escherichia coli using modified staphylococcal protein a signal peptide.

BMC biotechnology

Avec: Garshasb Rigi , Amin Rostami , Habib Ghomi , Gholamreza Ahmadian , Vasiqe Sadat Mirbagheri , Meisam Jeiranikhameneh , Majid Vahed , Sahel Rahimi

CCL113, a novel sulfonamide, induces selective mitotic arrest and apoptosis in HeLa and HepG2 cells.

Oncology reports

Avec: Ruirong Yi , Yoshifumi Ohno , Zheng Tian , Shuhan Guo , Weiwei Chen , Xue Ma , Nan Nwe Win , Qisen Li , Majid Vahed , Kengo Saito , Shingo Nakamoto , Akiko Suganami , Naohisa Isegawa , Keisuke Yoshida , Shinji Harada , Yutaka Tamura , Atsushi Nishida , Hiroshi Shirasawa

Analytical code sharing practices in biomedical research.

bioRxiv : the preprint server for biology

Avec: Nitesh Kumar Sharma , Ram Ayyala , Dhrithi Deshpande , Yesha M Patel , Viorel Munteanu , Dumitru Ciorba , Andrada Fiscutean , Mohammad Vahed , Aditya Sarkar , Ruiwei Guo , Andrew Moore , Nicholas Darci-Maher , Nicole A Nogoy , Malak S Abedalthagafi , Serghei Mangul

Analytical code sharing practices in biomedical research.

PeerJ. Computer science

Avec: Nitesh Kumar Sharma , Ram Ayyala , Dhrithi Deshpande , Yesha Patel , Viorel Munteanu , Dumitru Ciorba , Viorel Bostan , Andrada Fiscutean , Mohammad Vahed , Aditya Sarkar , Ruiwei Guo , Andrew Moore , Nicholas Darci-Maher , Nicole Nogoy , Malak Abedalthagafi , Serghei Mangul

Réseau de co-auteurs

Mohammad Vahed 9 collaborations

Abdolrazagh Hashemi Shahraki 5 collaborations

Mehdi Mirsaeidi 5 collaborations

Serghei Mangul 4 collaborations

Kerui Peng 2 collaborations

Jaqueline Brito 2 collaborations

Amanda M Burkhardt 2 collaborations

Houda Alachkar 2 collaborations

Hiroshi Shirasawa 2 collaborations

Malak S Abedalthagafi 2 collaborations

Gholamreza Ahmadian 2 collaborations

Nitesh Kumar Sharma 2 collaborations

Ram Ayyala 2 collaborations

Dhrithi Deshpande 2 collaborations

Viorel Munteanu 2 collaborations

Dumitru Ciorba 2 collaborations

Andrada Fiscutean 2 collaborations

Aditya Sarkar 2 collaborations

Ruiwei Guo 2 collaborations

Andrew Moore 2 collaborations

Nicholas Darci-Maher 2 collaborations

Jun-Ichi Ishihara 1 collaboration

Hiroki Takahashi 1 collaboration

M Vahed 1 collaboration

F Ramezani 1 collaboration

V Tafakori 1 collaboration

V S Mirbagheri 1 collaboration

A Najafi 1 collaboration

G Ahmadian 1 collaboration

Elena Quinonez 1 collaboration

Jaden Moore 1 collaboration

Guoyun Kao 1 collaboration

Aaron Sweeney 1 collaboration

Fatemeh Hashemi Amin 1 collaboration

Mahtab Ghaemi 1 collaboration

Sayyed Mostafa Mostafavi 1 collaboration

Ladan Goshayeshi 1 collaboration

Khadijeh Rezaei 1 collaboration

Mehdi Vahed 1 collaboration

Behzad Kiani 1 collaboration

Lana X Garmire 1 collaboration

Shahla Masood 1 collaboration

Theodore S Nowicki 1 collaboration

Katie Campbell 1 collaboration

Dandan Peng 1 collaboration

Yiting Meng 1 collaboration

Anish Nagareddy 1 collaboration

Yu-Ning Huang 1 collaboration

Aaron Karlsberg 1 collaboration

Zachary Miller 1 collaboration

Brian Nadel 1 collaboration

Victoria M Pak 1 collaboration

Antoni Ribas 1 collaboration

Saba Imani 1 collaboration

Shreya Satodia 1 collaboration

Roshan Dinparastisaleh 1 collaboration

Niyoosha Ameri 1 collaboration

Aliehsan Heidari 1 collaboration

Mehdi Mohebali 1 collaboration

Mozhgan Vahed 1 collaboration

Kourosh Kabir 1 collaboration

Zabihollah Zarei 1 collaboration

Behnaz Akhoundi 1 collaboration

Samira Elikaee 1 collaboration

Hojatallah Barati 1 collaboration

Monireh Sezavar 1 collaboration

Hossein Keshavarz 1 collaboration

Zahra Kakooei 1 collaboration

Homa Hajjaran 1 collaboration

Garshasb Rigi 1 collaboration

Amin Rostami 1 collaboration

Habib Ghomi 1 collaboration

Vasiqe Sadat Mirbagheri 1 collaboration

Meisam Jeiranikhameneh 1 collaboration

Sahel Rahimi 1 collaboration

Ruirong Yi 1 collaboration

Yoshifumi Ohno 1 collaboration

Zheng Tian 1 collaboration

Shuhan Guo 1 collaboration

Weiwei Chen 1 collaboration

Xue Ma 1 collaboration

Nan Nwe Win 1 collaboration

Qisen Li 1 collaboration

Kengo Saito 1 collaboration

Shingo Nakamoto 1 collaboration

Akiko Suganami 1 collaboration

Naohisa Isegawa 1 collaboration

Keisuke Yoshida 1 collaboration

Shinji Harada 1 collaboration

Yutaka Tamura 1 collaboration

Atsushi Nishida 1 collaboration

Yesha M Patel 1 collaboration

Nicole A Nogoy 1 collaboration

Yesha Patel 1 collaboration

Viorel Bostan 1 collaboration

Nicole Nogoy 1 collaboration

Malak Abedalthagafi 1 collaboration