Marco Punta

Affiliations

Unit of Immunogenetic, Leukemia Genomics and Immunobiology, IRCCS Ospedale San Raffaele, Milan, Italy.

Publications (17)

T-cell receptor determinants of response to chemoradiation in locally-advanced HPV16-driven malignancies.

Frontiers in oncology

Avec: Pablo Nenclares , Adrian Larkeryd , Floriana Manodoro , Jen Y Lee , Susan Lalondrelle , Duncan C Gilbert , Marco Punta , Ben O'Leary , Antonio Rullan , Anguraj Sadanandam , Benny Chain , Alan Melcher , Kevin J Harrington , Shreerang A Bhide

Preexisting Immunity Drives the Response to Neoadjuvant Chemotherapy in Esophageal Adenocarcinoma.

Cancer research

Avec: Giuseppina Arbore , Luca Albarello , Gabriele Bucci , Marco Punta , Andrea Cossu , Lorella Fanti , Aurora Maurizio , Francesco Di Mauro , Vito Bilello , Gianluigi Arrigoni , Silvia Bonfiglio , Donatella Biancolini , Francesco Puccetti , Ugo Elmore , Luca Vago , Stefano Cascinu , Giovanni Tonon , Riccardo Rosati , Giulia Casorati , Paolo Dellabona

Identification of single nucleotide variants using position-specific error estimation in deep sequencing data.

BMC medical genomics

Avec: Dimitrios Kleftogiannis , Marco Punta , Anuradha Jayaram , Shahneen Sandhu , Stephen Q Wong , Delila Gasi Tandefelt , Vincenza Conteduca , Daniel Wetterskog , Gerhardt Attard , Stefano Lise

Phase II trial of hypomethylating agent combined with nivolumab for acute myeloid leukaemia relapse after allogeneic haematopoietic cell transplantation-Immune signature correlates with response.

British journal of haematology

Avec: Petya Apostolova , Stefanie Kreutmair , Cristina Toffalori , Marco Punta , Susanne Unger , Ann-Cathrin Burk , Claudia Wehr , Kristina Maas-Bauer , Wolfgang Melchinger , Eileen Haring , Rouven Hoefflin , Khalid Shoumariyeh , Valerie Hupfer , Eliza Maria Lauer , Sandra Duquesne , Theresa Lowinus , Nicolás Gonzalo Núñez , Chiara Alberti , Sara da Costa Pereira , Carla Helena Merten , Laura Power , Matthias Weiss , Caroline Böke , Dietmar Pfeifer , Reinhard Marks , Hartmut Bertz , Ralph Wäsch , Gabriele Ihorst , Bernhard Gentner , Justus Duyster , Melanie Boerries , Geoffroy Andrieux , Juergen Finke , Burkhard Becher , Luca Vago , Robert Zeiser

Targeting MDM2 enhances antileukemia immunity after allogeneic transplantation via MHC-II and TRAIL-R1/2 upregulation.

Blood

Avec: Jenny N H G Ho , Dominik Schmidt , Theresa Lowinus , Jeongmin Ryoo , Elaine-Pashupati Dopfer , Nicolás Gonzalo Núñez , Sara Costa-Pereira , Cristina Toffalori , Marco Punta , Viktor Fetsch , Tobias Wertheimer , Marie-Claire Rittmann , Lukas M Braun , Marie Follo , Christelle Briere , Janaki Manoja Vinnakota , Marlene Langenbach , Felicitas Koppers , Khalid Shoumariyeh , Helena Engel , Tamina Rückert , Melanie Märklin , Samuel Holzmayer , Anna L Illert , Federica Magon , Geoffroy Andrieux , Sandra Duquesne , Dietmar Pfeifer , Julian Staniek , Marta Rizzi , Cornelius Miething , Natalie Köhler , Justus Duyster , Hans D Menssen , Melanie Boerries , Joerg M Buescher , Nina Cabezas-Wallscheid , Bruce R Blazar , Petya Apostolova , Luca Vago , Erika L Pearce , Burkhard Becher , Robert Zeiser

Extreme intratumour heterogeneity and driver evolution in mismatch repair deficient gastro-oesophageal cancer.

Nature communications

Avec: Katharina von Loga , Andrew Woolston , Marco Punta , Louise J Barber , Beatrice Griffiths , Maria Semiannikova , Georgia Spain , Benjamin Challoner , Kerry Fenwick , Ronald Simon , Andreas Marx , Guido Sauter , Stefano Lise , Nik Matthews , Marco Gerlinger

Author Correction: Extreme intratumour heterogeneity and driver evolution in mismatch repair deficient gastro-oesophageal cancer.

Nature communications

Avec: Katharina von Loga , Andrew Woolston , Marco Punta , Louise J Barber , Beatrice Griffiths , Maria Semiannikova , Georgia Spain , Benjamin Challoner , Kerry Fenwick , Ronald Simon , Andreas Marx , Guido Sauter , Stefano Lise , Nik Matthews , Marco Gerlinger

Genomic and Transcriptomic Determinants of Therapy Resistance and Immune Landscape Evolution during Anti-EGFR Treatment in Colorectal Cancer.

Cancer cell

Avec: Andrew Woolston , Khurum Khan , Georgia Spain , Louise J Barber , Beatrice Griffiths , Reyes Gonzalez-Exposito , Lisa Hornsteiner , Marco Punta , Yatish Patil , Alice Newey , Sonia Mansukhani , Matthew N Davies , Andrew Furness , Francesco Sclafani , Clare Peckitt , Mirta Jiménez , Kyriakos Kouvelakis , Romana Ranftl , Ruwaida Begum , Isma Rana , Janet Thomas , Annette Bryant , Sergio Quezada , Andrew Wotherspoon , Nasir Khan , Nikolaos Fotiadis , Teresa Marafioti , Thomas Powles , Stefano Lise , Fernando Calvo , Sebastian Guettler , Katharina von Loga , Sheela Rao , David Watkins , Naureen Starling , Ian Chau , Anguraj Sadanandam , David Cunningham , Marco Gerlinger

Density Peak clustering of protein sequences associated to a Pfam clan reveals clear similarities and interesting differences with respect to manual family annotation.

BMC bioinformatics

Avec: Elena Tea Russo , Alessandro Laio , Marco Punta

The Immunogenic Potential of Recurrent Cancer Drug Resistance Mutations: An

Frontiers in immunology

Avec: Marco Punta , Victoria A Jennings , Alan A Melcher , Stefano Lise

Solution Structure of the BPSL1445 Protein of

ACS chemical biology

Avec: Giacomo Quilici , Andrea Berardi , Chantal Fabris , Michela Ghitti , Marco Punta , Louise J Gourlay , Martino Bolognesi , Giovanna Musco

DPCfam: Unsupervised protein family classification by Density Peak Clustering of large sequence datasets.

PLoS computational biology

Avec: Elena Tea Russo , Federico Barone , Alex Bateman , Stefano Cozzini , Marco Punta , Alessandro Laio

Driver mutations in

Oncoimmunology

Avec: Sandra García-Mulero , Roberto Fornelino , Marco Punta , Stefano Lise , Mar Varela , Luis P Del Carpio , Rafael Moreno , Marcel Costa-García , Dietmar Rieder , Zlatko Trajanoski , Alena Gros , Ramón Alemany , Josep María Piulats , Rebeca Sanz-Pamplona

Clinical

Cancer discovery

Avec: Stephen J Pettitt , Jessica R Frankum , Marco Punta , Stefano Lise , John Alexander , Yi Chen , Timothy A Yap , Syed Haider , Andrew N J Tutt , Christopher J Lord

Protein family annotation for the Unified Human Gastrointestinal Proteome by DPCfam clustering.

Scientific data

Avec: Federico Barone , Elena Tea Russo , Edith Natalia Villegas Garcia , Marco Punta , Stefano Cozzini , Alessio Ansuini , Alberto Cazzaniga

Impact of predicted HLA class I immunopeptidome on viral reservoir in a cohort of people living with HIV in Italy.

HLA

Avec: Pier Edoardo Rovatti , Camilla Muccini , Marco Punta , Laura Galli , Ilaria Mainardi , Giacomo Ponta , Luca Aldo Edoardo Vago , Antonella Castagna

Harnessing T cell exhaustion and trogocytosis to isolate patient-derived tumor-specific TCR.

Science advances

Avec: Francesco Manfredi , Lorena Stasi , Silvia Buonanno , Francesca Marzuttini , Maddalena Noviello , Sara Mastaglio , Danilo Abbati , Alessia Potenza , Chiara Balestrieri , Beatrice Claudia Cianciotti , Elena Tassi , Sara Feola , Cristina Toffalori , Marco Punta , Zulma Magnani , Barbara Camisa , Elena Tiziano , Maria Teresa Lupo-Stanghellini , Rui Mamede Branca , Janne Lehtiö , Tiina M Sikanen , Markus J Haapala , Vincenzo Cerullo , Monica Casucci , Luca Vago , Fabio Ciceri , Chiara Bonini , Eliana Ruggiero

Réseau de co-auteurs

Stefano Lise 7 collaborations

Luca Vago 4 collaborations

Cristina Toffalori 3 collaborations

Katharina von Loga 3 collaborations

Andrew Woolston 3 collaborations

Louise J Barber 3 collaborations

Beatrice Griffiths 3 collaborations

Georgia Spain 3 collaborations

Marco Gerlinger 3 collaborations

Elena Tea Russo 3 collaborations

Anguraj Sadanandam 2 collaborations

Petya Apostolova 2 collaborations

Khalid Shoumariyeh 2 collaborations

Sandra Duquesne 2 collaborations

Theresa Lowinus 2 collaborations

Nicolás Gonzalo Núñez 2 collaborations

Dietmar Pfeifer 2 collaborations

Justus Duyster 2 collaborations

Melanie Boerries 2 collaborations

Geoffroy Andrieux 2 collaborations

Burkhard Becher 2 collaborations

Robert Zeiser 2 collaborations

Maria Semiannikova 2 collaborations

Benjamin Challoner 2 collaborations

Kerry Fenwick 2 collaborations

Ronald Simon 2 collaborations

Andreas Marx 2 collaborations

Guido Sauter 2 collaborations

Nik Matthews 2 collaborations

Alessandro Laio 2 collaborations

Federico Barone 2 collaborations

Stefano Cozzini 2 collaborations

Pablo Nenclares 1 collaboration

Adrian Larkeryd 1 collaboration

Floriana Manodoro 1 collaboration

Jen Y Lee 1 collaboration

Susan Lalondrelle 1 collaboration

Duncan C Gilbert 1 collaboration

Ben O'Leary 1 collaboration

Antonio Rullan 1 collaboration

Benny Chain 1 collaboration

Alan Melcher 1 collaboration

Kevin J Harrington 1 collaboration

Shreerang A Bhide 1 collaboration

Giuseppina Arbore 1 collaboration

Luca Albarello 1 collaboration

Gabriele Bucci 1 collaboration

Andrea Cossu 1 collaboration

Lorella Fanti 1 collaboration

Aurora Maurizio 1 collaboration

Francesco Di Mauro 1 collaboration

Vito Bilello 1 collaboration

Gianluigi Arrigoni 1 collaboration

Silvia Bonfiglio 1 collaboration

Donatella Biancolini 1 collaboration

Francesco Puccetti 1 collaboration

Ugo Elmore 1 collaboration

Stefano Cascinu 1 collaboration

Giovanni Tonon 1 collaboration

Riccardo Rosati 1 collaboration

Giulia Casorati 1 collaboration

Paolo Dellabona 1 collaboration

Dimitrios Kleftogiannis 1 collaboration

Anuradha Jayaram 1 collaboration

Shahneen Sandhu 1 collaboration

Stephen Q Wong 1 collaboration

Delila Gasi Tandefelt 1 collaboration

Vincenza Conteduca 1 collaboration

Daniel Wetterskog 1 collaboration

Gerhardt Attard 1 collaboration

Stefanie Kreutmair 1 collaboration

Susanne Unger 1 collaboration

Ann-Cathrin Burk 1 collaboration

Claudia Wehr 1 collaboration

Kristina Maas-Bauer 1 collaboration

Wolfgang Melchinger 1 collaboration

Eileen Haring 1 collaboration

Rouven Hoefflin 1 collaboration

Valerie Hupfer 1 collaboration

Eliza Maria Lauer 1 collaboration

Chiara Alberti 1 collaboration

Sara da Costa Pereira 1 collaboration

Carla Helena Merten 1 collaboration

Laura Power 1 collaboration

Matthias Weiss 1 collaboration

Caroline Böke 1 collaboration

Reinhard Marks 1 collaboration

Hartmut Bertz 1 collaboration

Ralph Wäsch 1 collaboration

Gabriele Ihorst 1 collaboration

Bernhard Gentner 1 collaboration

Juergen Finke 1 collaboration

Jenny N H G Ho 1 collaboration

Dominik Schmidt 1 collaboration

Jeongmin Ryoo 1 collaboration

Elaine-Pashupati Dopfer 1 collaboration

Sara Costa-Pereira 1 collaboration

Viktor Fetsch 1 collaboration

Tobias Wertheimer 1 collaboration

Marie-Claire Rittmann 1 collaboration

Lukas M Braun 1 collaboration

Marie Follo 1 collaboration

Christelle Briere 1 collaboration

Janaki Manoja Vinnakota 1 collaboration

Marlene Langenbach 1 collaboration

Felicitas Koppers 1 collaboration

Helena Engel 1 collaboration

Tamina Rückert 1 collaboration

Melanie Märklin 1 collaboration

Samuel Holzmayer 1 collaboration

Anna L Illert 1 collaboration

Federica Magon 1 collaboration

Julian Staniek 1 collaboration

Marta Rizzi 1 collaboration

Cornelius Miething 1 collaboration

Natalie Köhler 1 collaboration

Hans D Menssen 1 collaboration

Joerg M Buescher 1 collaboration

Nina Cabezas-Wallscheid 1 collaboration

Bruce R Blazar 1 collaboration

Erika L Pearce 1 collaboration

Khurum Khan 1 collaboration

Reyes Gonzalez-Exposito 1 collaboration

Lisa Hornsteiner 1 collaboration

Yatish Patil 1 collaboration

Alice Newey 1 collaboration

Sonia Mansukhani 1 collaboration

Matthew N Davies 1 collaboration

Andrew Furness 1 collaboration

Francesco Sclafani 1 collaboration

Clare Peckitt 1 collaboration

Mirta Jiménez 1 collaboration

Kyriakos Kouvelakis 1 collaboration

Romana Ranftl 1 collaboration

Ruwaida Begum 1 collaboration

Isma Rana 1 collaboration

Janet Thomas 1 collaboration

Annette Bryant 1 collaboration

Sergio Quezada 1 collaboration

Andrew Wotherspoon 1 collaboration

Nasir Khan 1 collaboration

Nikolaos Fotiadis 1 collaboration

Teresa Marafioti 1 collaboration

Thomas Powles 1 collaboration

Fernando Calvo 1 collaboration

Sebastian Guettler 1 collaboration

Sheela Rao 1 collaboration

David Watkins 1 collaboration

Naureen Starling 1 collaboration

Ian Chau 1 collaboration

David Cunningham 1 collaboration

Victoria A Jennings 1 collaboration

Alan A Melcher 1 collaboration

Giacomo Quilici 1 collaboration

Andrea Berardi 1 collaboration

Chantal Fabris 1 collaboration

Michela Ghitti 1 collaboration

Louise J Gourlay 1 collaboration

Martino Bolognesi 1 collaboration

Giovanna Musco 1 collaboration

Alex Bateman 1 collaboration

Sandra García-Mulero 1 collaboration

Roberto Fornelino 1 collaboration

Mar Varela 1 collaboration

Luis P Del Carpio 1 collaboration

Rafael Moreno 1 collaboration

Marcel Costa-García 1 collaboration

Dietmar Rieder 1 collaboration

Zlatko Trajanoski 1 collaboration

Alena Gros 1 collaboration

Ramón Alemany 1 collaboration

Josep María Piulats 1 collaboration

Rebeca Sanz-Pamplona 1 collaboration

Stephen J Pettitt 1 collaboration

Jessica R Frankum 1 collaboration

John Alexander 1 collaboration

Yi Chen 1 collaboration

Timothy A Yap 1 collaboration

Syed Haider 1 collaboration

Andrew N J Tutt 1 collaboration

Christopher J Lord 1 collaboration

Edith Natalia Villegas Garcia 1 collaboration

Alessio Ansuini 1 collaboration

Alberto Cazzaniga 1 collaboration

Pier Edoardo Rovatti 1 collaboration

Camilla Muccini 1 collaboration

Laura Galli 1 collaboration

Ilaria Mainardi 1 collaboration

Giacomo Ponta 1 collaboration

Luca Aldo Edoardo Vago 1 collaboration

Antonella Castagna 1 collaboration

Francesco Manfredi 1 collaboration

Lorena Stasi 1 collaboration

Silvia Buonanno 1 collaboration

Francesca Marzuttini 1 collaboration

Maddalena Noviello 1 collaboration

Sara Mastaglio 1 collaboration

Danilo Abbati 1 collaboration

Alessia Potenza 1 collaboration

Chiara Balestrieri 1 collaboration

Beatrice Claudia Cianciotti 1 collaboration

Elena Tassi 1 collaboration

Sara Feola 1 collaboration

Zulma Magnani 1 collaboration

Barbara Camisa 1 collaboration

Elena Tiziano 1 collaboration

Maria Teresa Lupo-Stanghellini 1 collaboration

Rui Mamede Branca 1 collaboration

Janne Lehtiö 1 collaboration

Tiina M Sikanen 1 collaboration

Markus J Haapala 1 collaboration

Vincenzo Cerullo 1 collaboration

Monica Casucci 1 collaboration

Fabio Ciceri 1 collaboration

Chiara Bonini 1 collaboration

Eliana Ruggiero 1 collaboration