Martin Middendorf

Affiliations

Swarm Intelligence and Complex Systems, Department of Computer Science, Universität Leipzig, Augustusplatz 10, D-04109 Leipzig, Germany.

Publications (23)

Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes.

Nucleic acids research

Avec: Alexander Donath , Frank Jühling , Marwa Al-Arab , Stephan H Bernhart , Franziska Reinhardt , Peter F Stadler , Martin Middendorf , Matthias Bernt

Automated monitoring of honey bees with barcodes and artificial intelligence reveals two distinct social networks from a single affiliative behavior.

Scientific reports

Avec: Tim Gernat , Tobias Jagla , Beryl M Jones , Martin Middendorf , Gene E Robinson

Partner-developed electronic health record tools to facilitate social risk-informed care planning.

Journal of the American Medical Informatics Association : JAMIA

Avec: Rose Gunn , Maura Pisciotta , Rachel Gold , Arwen Bunce , Katie Dambrun , Erika K Cottrell , Danielle Hessler , Mary Middendorf , Miguel Alvarez , Lydia Giles , Laura M Gottlieb

Sorting Signed Permutations by Inverse Tandem Duplication Random Losses.

IEEE/ACM transactions on computational biology and bioinformatics

Avec: Tom Hartmann , Max Bannach , Martin Middendorf

Evolutionary Dynamic Multiobjective Optimization via Learning From Historical Search Process.

IEEE transactions on cybernetics

Avec: Qi Zhao , Bai Yan , Yuhui Shi , Martin Middendorf

Detecting gene breakpoints in noisy genome sequences using position-annotated colored de-Bruijn graphs.

BMC bioinformatics

Avec: Lisa Fiedler , Matthias Bernt , Martin Middendorf , Peter F Stadler

An Exact Algorithm for Sorting by Weighted Preserving Genome Rearrangements.

IEEE/ACM transactions on computational biology and bioinformatics

Avec: Tom Hartmann , Matthias Bernt , Martin Middendorf

Re-assessing the diversity of negative strand RNA viruses in insects.

PLoS pathogens

Avec: Simon Käfer , Sofia Paraskevopoulou , Florian Zirkel , Nicolas Wieseke , Alexander Donath , Malte Petersen , Terry C Jones , Shanlin Liu , Xin Zhou , Martin Middendorf , Sandra Junglen , Bernhard Misof , Christian Drosten

Iterated Local Search and Other Algorithms for Buffered Two-Machine Permutation Flow Shops with Constant Processing Times on One Machine.

Evolutionary computation

Avec: Hoang Thanh Le , Philine Geser , Martin Middendorf

Challenges involved in establishing a web-based clinical decision support tool in community health centers.

Healthcare (Amsterdam, Netherlands)

Avec: Rachel Gold , Mary Middendorf , John Heintzman , Joan Nelson , Patrick O'Connor , JoAnn Sperl-Hillen , Deepika Appana , Erik Geissal , Vijay Thirumalai , Christina Sheppler , Maryjane Dunne

Individual differences in honey bee behavior enabled by plasticity in brain gene regulatory networks.

eLife

Avec: Beryl M Jones , Vikyath D Rao , Tim Gernat , Tobias Jagla , Amy C Cash-Ahmed , Benjamin Er Rubin , Troy J Comi , Shounak Bhogale , Syed S Husain , Charles Blatti , Martin Middendorf , Saurabh Sinha , Sriram Chandrasekaran , Gene E Robinson

Effect of Clinical Decision Support at Community Health Centers on the Risk of Cardiovascular Disease: A Cluster Randomized Clinical Trial.

JAMA network open

Avec: Rachel Gold , Annie E Larson , JoAnn M Sperl-Hillen , David Boston , Christina R Sheppler , John Heintzman , Carmit McMullen , Mary Middendorf , Deepika Appana , Vijayakumar Thirumalai , Ann Romer , Julianne Bava , James V Davis , Nadia Yosuf , Jenny Hauschildt , Kristin Scott , Susan Moore , Patrick J O'Connor

Implications of Anion Structure on Physicochemical Properties of DBU-Based Protic Ionic Liquids.

The journal of physical chemistry. B

Avec: Giselle de Araujo Lima E Souza , Maria Enrica Di Pietro , Franca Castiglione , Pedro Henrique Marques Mezencio , Patricia Fazzio Martins Martinez , Alessandro Mariani , Hanno Maria Schütz , Stefano Passerini , Maleen Middendorf , Monika Schönhoff , Alessandro Triolo , Giovanni Battista Appetecchi , Andrea Mele

Comparative Study of 2D Petrographic and 3D X-ray Tomography Investigations of Air Voids in Asphalt.

Materials (Basel, Switzerland)

Avec: Moritz Middendorf , Cristin Umbach , Stefan Böhm , Jia Liu , Bernhard Middendorf

Genome Rearrangement Analysis : Cut and Join Genome Rearrangements and Gene Cluster Preserving Approaches.

Methods in molecular biology (Clifton, N.J.)

Avec: Tom Hartmann , Martin Middendorf , Matthias Bernt

Evolving better solvate electrolytes for lithium secondary batteries.

Chemical science

Avec: Frederik Philippi , Maleen Middendorf , Keisuke Shigenobu , Yuna Matsuyama , Oriele Palumbo , David Pugh , Taku Sudoh , Kaoru Dokko , Masayoshi Watanabe , Monika Schönhoff , Wataru Shinoda , Kazuhide Ueno

Overdetermination method for accurate dynamic ion correlations in highly concentrated electrolytes.

Faraday discussions

Avec: Tabita Pothmann , Maleen Middendorf , Christian Gerken , Pinchas Nürnberg , Monika Schönhoff , Bernhard Roling

Diffusion and structure of propylene carbonate-metal salt electrolyte solutions for post-lithium-ion batteries: From experiment to simulation.

The Journal of chemical physics

Avec: Argyrios V Karatrantos , Maleen Middendorf , Daniil R Nosov , Qiong Cai , Stephan Westermann , Katja Hoffmann , Pinchas Nürnberg , Alexander S Shaplov , Monika Schönhoff

Study protocol: a pragmatic, stepped-wedge trial of tailored support for implementing social determinants of health documentation/action in community health centers, with realist evaluation.

Implementation science : IS

Avec: Rachel Gold , Arwen Bunce , Erika Cottrell , Miguel Marino , Mary Middendorf , Stuart Cowburn , Dagan Wright , Ned Mossman , Katie Dambrun , Byron J Powell , Inga Gruß , Laura Gottlieb , Marla Dearing , Jason Scott , Nadia Yosuf , Molly Krancari

Determination of Suitable Imaging Techniques for the Investigation of the Bonding Zones of Asphalt Layers.

Materials (Basel, Switzerland)

Avec: Moritz Middendorf , Cristin Umbach , Stefan Böhm , Bernhard Middendorf

Fully automated annotation of mitochondrial genomes using a cluster-based approach with de Bruijn graphs.

Frontiers in genetics

Avec: Lisa Fiedler , Martin Middendorf , Matthias Bernt

DeGeCI 1.1: a web platform for gene annotation of mitochondrial genomes.

Bioinformatics advances

Avec: Lisa Fiedler , Matthias Bernt , Martin Middendorf

Nonstoichiometric Protic Ionic Liquids: The Role of Excess Acid in Charge Transport Mechanisms.

The journal of physical chemistry. B

Avec: Maleen Middendorf , Monika Schönhoff

Réseau de co-auteurs

Matthias Bernt 6 collaborations

Maleen Middendorf 5 collaborations

Monika Schönhoff 5 collaborations

Rachel Gold 4 collaborations

Mary Middendorf 4 collaborations

Tom Hartmann 3 collaborations

Lisa Fiedler 3 collaborations

Alexander Donath 2 collaborations

Peter F Stadler 2 collaborations

Tim Gernat 2 collaborations

Tobias Jagla 2 collaborations

Beryl M Jones 2 collaborations

Gene E Robinson 2 collaborations

Arwen Bunce 2 collaborations

Katie Dambrun 2 collaborations

John Heintzman 2 collaborations

Deepika Appana 2 collaborations

Nadia Yosuf 2 collaborations

Moritz Middendorf 2 collaborations

Cristin Umbach 2 collaborations

Stefan Böhm 2 collaborations

Bernhard Middendorf 2 collaborations

Pinchas Nürnberg 2 collaborations

Frank Jühling 1 collaboration

Marwa Al-Arab 1 collaboration

Stephan H Bernhart 1 collaboration

Franziska Reinhardt 1 collaboration

Rose Gunn 1 collaboration

Maura Pisciotta 1 collaboration

Erika K Cottrell 1 collaboration

Danielle Hessler 1 collaboration

Miguel Alvarez 1 collaboration

Lydia Giles 1 collaboration

Laura M Gottlieb 1 collaboration

Max Bannach 1 collaboration

Qi Zhao 1 collaboration

Bai Yan 1 collaboration

Yuhui Shi 1 collaboration

Simon Käfer 1 collaboration

Sofia Paraskevopoulou 1 collaboration

Florian Zirkel 1 collaboration

Nicolas Wieseke 1 collaboration

Malte Petersen 1 collaboration

Terry C Jones 1 collaboration

Shanlin Liu 1 collaboration

Xin Zhou 1 collaboration

Sandra Junglen 1 collaboration

Bernhard Misof 1 collaboration

Christian Drosten 1 collaboration

Hoang Thanh Le 1 collaboration

Philine Geser 1 collaboration

Joan Nelson 1 collaboration

Patrick O'Connor 1 collaboration

JoAnn Sperl-Hillen 1 collaboration

Erik Geissal 1 collaboration

Vijay Thirumalai 1 collaboration

Christina Sheppler 1 collaboration

Maryjane Dunne 1 collaboration

Vikyath D Rao 1 collaboration

Amy C Cash-Ahmed 1 collaboration

Benjamin Er Rubin 1 collaboration

Troy J Comi 1 collaboration

Shounak Bhogale 1 collaboration

Syed S Husain 1 collaboration

Charles Blatti 1 collaboration

Saurabh Sinha 1 collaboration

Sriram Chandrasekaran 1 collaboration

Annie E Larson 1 collaboration

JoAnn M Sperl-Hillen 1 collaboration

David Boston 1 collaboration

Christina R Sheppler 1 collaboration

Carmit McMullen 1 collaboration

Vijayakumar Thirumalai 1 collaboration

Ann Romer 1 collaboration

Julianne Bava 1 collaboration

James V Davis 1 collaboration

Jenny Hauschildt 1 collaboration

Kristin Scott 1 collaboration

Susan Moore 1 collaboration

Patrick J O'Connor 1 collaboration

Giselle de Araujo Lima E Souza 1 collaboration

Maria Enrica Di Pietro 1 collaboration

Franca Castiglione 1 collaboration

Pedro Henrique Marques Mezencio 1 collaboration

Patricia Fazzio Martins Martinez 1 collaboration

Alessandro Mariani 1 collaboration

Hanno Maria Schütz 1 collaboration

Stefano Passerini 1 collaboration

Alessandro Triolo 1 collaboration

Giovanni Battista Appetecchi 1 collaboration

Andrea Mele 1 collaboration

Jia Liu 1 collaboration

Frederik Philippi 1 collaboration

Keisuke Shigenobu 1 collaboration

Yuna Matsuyama 1 collaboration

Oriele Palumbo 1 collaboration

David Pugh 1 collaboration

Taku Sudoh 1 collaboration

Kaoru Dokko 1 collaboration

Masayoshi Watanabe 1 collaboration

Wataru Shinoda 1 collaboration

Kazuhide Ueno 1 collaboration

Tabita Pothmann 1 collaboration

Christian Gerken 1 collaboration

Bernhard Roling 1 collaboration

Argyrios V Karatrantos 1 collaboration

Daniil R Nosov 1 collaboration

Qiong Cai 1 collaboration

Stephan Westermann 1 collaboration

Katja Hoffmann 1 collaboration

Alexander S Shaplov 1 collaboration

Erika Cottrell 1 collaboration

Miguel Marino 1 collaboration

Stuart Cowburn 1 collaboration

Dagan Wright 1 collaboration

Ned Mossman 1 collaboration

Byron J Powell 1 collaboration

Inga Gruß 1 collaboration

Laura Gottlieb 1 collaboration

Marla Dearing 1 collaboration

Jason Scott 1 collaboration

Molly Krancari 1 collaboration