Moritz Weigt

Affiliations

Division of Medical Physics, Department of Radiology, Medical Center, Faculty of Medicine, University of Freiburg, Killianstr. 5a, 79106, Freiburg, Germany.

ORCID: 0009-0007-6228-8600

Publications (23)

Selection of sequence motifs and generative Hopfield-Potts models for protein families.

Physical review. E

Avec: Kai Shimagaki , Martin Weigt

Sparse generative modeling via parameter reduction of Boltzmann machines: Application to protein-sequence families.

Physical review. E

Avec: Pierre Barrat-Charlaix , Anna Paola Muntoni , Kai Shimagaki , Martin Weigt , Francesco Zamponi

Modeling Sequence-Space Exploration and Emergence of Epistatic Signals in Protein Evolution.

Molecular biology and evolution

Avec: Matteo Bisardi , Juan Rodriguez-Rivas , Francesco Zamponi , Martin Weigt

Efficient generative modeling of protein sequences using simple autoregressive models.

Nature communications

Avec: Jeanne Trinquier , Guido Uguzzoni , Andrea Pagnani , Francesco Zamponi , Martin Weigt

In Vivo Metabolic Imaging of [1-

Angewandte Chemie (International ed. in English)

Avec: Henri de Maissin , Philipp R Groß , Obaid Mohiuddin , Moritz Weigt , Luca Nagel , Marvin Herzog , Zirun Wang , Robert Willing , Wilfried Reichardt , Martin Pichotka , Lisa Heß , Thomas Reinheckel , Henning J Jessen , Robert Zeiser , Michael Bock , Dominik von Elverfeldt , Maxim Zaitsev , Sergey Korchak , Stefan Glöggler , Jan-Bernd Hövener , Eduard Y Chekmenev , Franz Schilling , Stephan Knecht , Andreas B Schmidt

Towards parsimonious generative modeling of RNA families.

Nucleic acids research

Avec: Francesco Calvanese , Camille N Lambert , Philippe Nghe , Francesco Zamponi , Martin Weigt

An evolution-based model for designing chorismate mutase enzymes.

Science (New York, N.Y.)

Avec: William P Russ , Matteo Figliuzzi , Christian Stocker , Pierre Barrat-Charlaix , Michael Socolich , Peter Kast , Donald Hilvert , Remi Monasson , Simona Cocco , Martin Weigt , Rama Ranganathan

Predicting Interacting Protein Pairs by Coevolutionary Paralog Matching.

Methods in molecular biology (Clifton, N.J.)

Avec: Thomas Gueudré , Carlo Baldassi , Andrea Pagnani , Martin Weigt

Aligning biological sequences by exploiting residue conservation and coevolution.

Physical review. E

Avec: Anna Paola Muntoni , Andrea Pagnani , Martin Weigt , Francesco Zamponi

On the effect of phylogenetic correlations in coevolution-based contact prediction in proteins.

PLoS computational biology

Avec: Edwin Rodriguez Horta , Martin Weigt

FilterDCA: Interpretable supervised contact prediction using inter-domain coevolution.

PLoS computational biology

Avec: Maureen Muscat , Giancarlo Croce , Edoardo Sarti , Martin Weigt

Phylogenetic correlations can suffice to infer protein partners from sequences.

PLoS computational biology

Avec: Guillaume Marmier , Martin Weigt , Anne-Florence Bitbol

Structures of a dimodular nonribosomal peptide synthetase reveal conformational flexibility.

Science (New York, N.Y.)

Avec: Janice M Reimer , Maximilian Eivaskhani , Ingrid Harb , Alba Guarné , Martin Weigt , T Martin Schmeing

Statistical physics of interacting proteins: Impact of dataset size and quality assessed in synthetic sequences.

Physical review. E

Avec: Carlos A Gandarilla-Pérez , Pierre Mergny , Martin Weigt , Anne-Florence Bitbol

Food sources for camptandriid crabs in an arid mangrove ecosystem of the Persian Gulf: a stable isotope approach.

Isotopes in environmental and health studies

Avec: Mohammad Reza Hemmati , Mehdi Ghodrati Shojaei , Ali Taheri Mirghaed , Melika Mashhadi Farahani , Maryam Weigt

A multi-scale coevolutionary approach to predict interactions between protein domains.

PLoS computational biology

Avec: Giancarlo Croce , Thomas Gueudré , Maria Virginia Ruiz Cuevas , Victoria Keidel , Matteo Figliuzzi , Hendrik Szurmant , Martin Weigt

adabmDCA: adaptive Boltzmann machine learning for biological sequences.

BMC bioinformatics

Avec: Anna Paola Muntoni , Andrea Pagnani , Martin Weigt , Francesco Zamponi

Rbm10 facilitates heterochromatin assembly via the Clr6 HDAC complex.

Epigenetics & chromatin

Avec: Martina Weigt , Qingsong Gao , Hyoju Ban , Haijin He , Guido Mastrobuoni , Stefan Kempa , Wei Chen , Fei Li

Combining phylogeny and coevolution improves the inference of interaction partners among paralogous proteins.

PLoS computational biology

Avec: Carlos A Gandarilla-Pérez , Sergio Pinilla , Anne-Florence Bitbol , Martin Weigt

TULIP: A transformer-based unsupervised language model for interacting peptides and T cell receptors that generalizes to unseen epitopes.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Barthelemy Meynard-Piganeau , Christoph Feinauer , Martin Weigt , Aleksandra M Walczak , Thierry Mora

Emergent time scales of epistasis in protein evolution.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Leonardo Di Bari , Matteo Bisardi , Sabrina Cotogno , Martin Weigt , Francesco Zamponi

Epistatic models predict mutable sites in SARS-CoV-2 proteins and epitopes.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Juan Rodriguez-Rivas , Giancarlo Croce , Maureen Muscat , Martin Weigt

Pilot study on high-resolution radiological methods for the analysis of cerebrospinal fluid (CSF) shunt valves.

Zeitschrift fur medizinische Physik

Avec: Martin P Pichotka , Moritz Weigt , Mukesch J Shah , Maximilian F Russe , Thomas Stein , T Billoud , Jürgen Beck , Jakob Straehle , Christopher L Schlett , Dominik V Elverfeldt , Marco Reisert

Réseau de co-auteurs

Martin Weigt 19 collaborations

Francesco Zamponi 7 collaborations

Andrea Pagnani 4 collaborations

Anna Paola Muntoni 3 collaborations

Giancarlo Croce 3 collaborations

Anne-Florence Bitbol 3 collaborations

Kai Shimagaki 2 collaborations

Pierre Barrat-Charlaix 2 collaborations

Matteo Bisardi 2 collaborations

Juan Rodriguez-Rivas 2 collaborations

Matteo Figliuzzi 2 collaborations

Thomas Gueudré 2 collaborations

Maureen Muscat 2 collaborations

Carlos A Gandarilla-Pérez 2 collaborations

Jeanne Trinquier 1 collaboration

Guido Uguzzoni 1 collaboration

Henri de Maissin 1 collaboration

Philipp R Groß 1 collaboration

Obaid Mohiuddin 1 collaboration

Luca Nagel 1 collaboration

Marvin Herzog 1 collaboration

Zirun Wang 1 collaboration

Robert Willing 1 collaboration

Wilfried Reichardt 1 collaboration

Martin Pichotka 1 collaboration

Lisa Heß 1 collaboration

Thomas Reinheckel 1 collaboration

Henning J Jessen 1 collaboration

Robert Zeiser 1 collaboration

Michael Bock 1 collaboration

Dominik von Elverfeldt 1 collaboration

Maxim Zaitsev 1 collaboration

Sergey Korchak 1 collaboration

Stefan Glöggler 1 collaboration

Jan-Bernd Hövener 1 collaboration

Eduard Y Chekmenev 1 collaboration

Franz Schilling 1 collaboration

Stephan Knecht 1 collaboration

Andreas B Schmidt 1 collaboration

Francesco Calvanese 1 collaboration

Camille N Lambert 1 collaboration

Philippe Nghe 1 collaboration

William P Russ 1 collaboration

Christian Stocker 1 collaboration

Michael Socolich 1 collaboration

Peter Kast 1 collaboration

Donald Hilvert 1 collaboration

Remi Monasson 1 collaboration

Simona Cocco 1 collaboration

Rama Ranganathan 1 collaboration

Carlo Baldassi 1 collaboration

Edwin Rodriguez Horta 1 collaboration

Edoardo Sarti 1 collaboration

Guillaume Marmier 1 collaboration

Janice M Reimer 1 collaboration

Maximilian Eivaskhani 1 collaboration

Ingrid Harb 1 collaboration

Alba Guarné 1 collaboration

T Martin Schmeing 1 collaboration

Pierre Mergny 1 collaboration

Mohammad Reza Hemmati 1 collaboration

Mehdi Ghodrati Shojaei 1 collaboration

Ali Taheri Mirghaed 1 collaboration

Melika Mashhadi Farahani 1 collaboration

Maryam Weigt 1 collaboration

Maria Virginia Ruiz Cuevas 1 collaboration

Victoria Keidel 1 collaboration

Hendrik Szurmant 1 collaboration

Martina Weigt 1 collaboration

Qingsong Gao 1 collaboration

Hyoju Ban 1 collaboration

Haijin He 1 collaboration

Guido Mastrobuoni 1 collaboration

Stefan Kempa 1 collaboration

Wei Chen 1 collaboration

Fei Li 1 collaboration

Sergio Pinilla 1 collaboration

Barthelemy Meynard-Piganeau 1 collaboration

Christoph Feinauer 1 collaboration

Aleksandra M Walczak 1 collaboration

Thierry Mora 1 collaboration

Leonardo Di Bari 1 collaboration

Sabrina Cotogno 1 collaboration

Martin P Pichotka 1 collaboration

Mukesch J Shah 1 collaboration

Maximilian F Russe 1 collaboration

Thomas Stein 1 collaboration

T Billoud 1 collaboration

Jürgen Beck 1 collaboration

Jakob Straehle 1 collaboration

Christopher L Schlett 1 collaboration

Dominik V Elverfeldt 1 collaboration

Marco Reisert 1 collaboration