Naeem M Nadaf

Affiliations

Broad Institute of MIT and Harvard, Cambridge, MA, USA.

Publications (11)

Spatial genomics enables multi-modal study of clonal heterogeneity in tissues.

Nature

Avec: Tongtong Zhao , Zachary D Chiang , Julia W Morriss , Lindsay M LaFave , Evan M Murray , Isabella Del Priore , Kevin Meli , Caleb A Lareau , Naeem M Nadaf , Jilong Li , Andrew S Earl , Evan Z Macosko , Tyler Jacks , Jason D Buenrostro , Fei Chen

The molecular cytoarchitecture of the adult mouse brain.

Nature

Avec: Jonah Langlieb , Nina S Sachdev , Karol S Balderrama , Naeem M Nadaf , Mukund Raj , Evan Murray , James T Webber , Charles Vanderburg , Vahid Gazestani , Daniel Tward , Chris Mezias , Xu Li , Katelyn Flowers , Dylan M Cable , Tabitha Norton , Partha Mitra , Fei Chen , Evan Z Macosko

Early Alzheimer's disease pathology in human cortex involves transient cell states.

Cell

Avec: Vahid Gazestani , Tushar Kamath , Naeem M Nadaf , Antonios Dougalis , S J Burris , Brendan Rooney , Antti Junkkari , Charles Vanderburg , Anssi Pelkonen , Mireia Gomez-Budia , Nelli-Noora Välimäki , Tuomas Rauramaa , Martine Therrien , Anne M Koivisto , Matthew Tegtmeyer , Sanna-Kaisa Herukka , Abdulraouf Abdulraouf , Samuel E Marsh , Mikko Hiltunen , Ralda Nehme , Tarja Malm , Beth Stevens , Ville Leinonen , Evan Z Macosko

Candelabrum cells are ubiquitous cerebellar cortex interneurons with specialized circuit properties.

Nature neuroscience

Avec: Tomas Osorno , Stephanie Rudolph , Tri Nguyen , Velina Kozareva , Naeem M Nadaf , Aliya Norton , Evan Z Macosko , Wei-Chung Allen Lee , Wade G Regehr

The cell type composition of the adult mouse brain revealed by single cell and spatial genomics.

bioRxiv : the preprint server for biology

Avec: Jonah Langlieb , Nina S Sachdev , Karol S Balderrama , Naeem M Nadaf , Mukund Raj , Evan Murray , James T Webber , Charles Vanderburg , Vahid Gazestani , Daniel Tward , Chris Mezias , Xu Li , Dylan M Cable , Tabitha Norton , Partha Mitra , Fei Chen , Evan Z Macosko

Thyroid hormone rewires cortical circuits to coordinate body-wide metabolism and exploratory drive.

bioRxiv : the preprint server for biology

Avec: Daniel R Hochbaum , Alexandra C Dubinsky , Hannah C Farnsworth , Lauren Hulshof , Giona Kleinberg , Amanda Urke , Wengang Wang , Richard Hakim , Keira Robertson , Canaria Park , Alyssa Solberg , Yechan Yang , Caroline Baynard , Naeem M Nadaf , Celia C Beron , Allison E Girasole , Lynne Chantranupong , Marissa Cortopassi , Shannon Prouty , Ludwig Geistlinger , Alexander Banks , Thomas Scanlan , Michael E Greenberg , Gabriella L Boulting , Evan Z Macosko , Bernardo L Sabatini

A Purkinje cell to parabrachial nucleus pathway enables broad cerebellar influence over the forebrain.

Nature neuroscience

Avec: Christopher H Chen , Leannah N Newman , Amanda P Stark , Katherine E Bond , Dawei Zhang , Stefano Nardone , Charles R Vanderburg , Naeem M Nadaf , Zhiyi Yao , Kefiloe Mutume , Isabella Flaquer , Bradford B Lowell , Evan Z Macosko , Wade G Regehr

Thyroid hormone remodels cortex to coordinate body-wide metabolism and exploration.

Cell

Avec: Daniel R Hochbaum , Lauren Hulshof , Amanda Urke , Wengang Wang , Alexandra C Dubinsky , Hannah C Farnsworth , Richard Hakim , Sherry Lin , Giona Kleinberg , Keiramarie Robertson , Canaria Park , Alyssa Solberg , Yechan Yang , Caroline Baynard , Naeem M Nadaf , Celia C Beron , Allison E Girasole , Lynne Chantranupong , Marissa D Cortopassi , Shannon Prouty , Ludwig Geistlinger , Alexander S Banks , Thomas S Scanlan , Sandeep Robert Datta , Michael E Greenberg , Gabriella L Boulting , Evan Z Macosko , Bernardo L Sabatini

Early Alzheimer's disease pathology in human cortex is associated with a transient phase of distinct cell states.

bioRxiv : the preprint server for biology

Avec: Vahid Gazestani , Tushar Kamath , Naeem M Nadaf , S J Burris , Brendan Rooney , Antti Junkkari , Charles Vanderburg , Tuomas Rauramaa , Martine Therrien , Matthew Tegtmeyer , Sanna-Kaisa Herukka , Abdulraouf Abdulraouf , Samuel Marsh , Tarja Malm , Mikko Hiltunen , Ralda Nehme , Beth Stevens , Ville Leinonen , Evan Z Macosko

Slide-tags: scalable, single-nucleus barcoding for multi-modal spatial genomics.

bioRxiv : the preprint server for biology

Avec: Andrew J C Russell , Jackson A Weir , Naeem M Nadaf , Matthew Shabet , Vipin Kumar , Sandeep Kambhampati , Ruth Raichur , Giovanni J Marrero , Sophia Liu , Karol S Balderrama , Charles R Vanderburg , Vignesh Shanmugam , Luyi Tian , Catherine J Wu , Charles H Yoon , Evan Z Macosko , Fei Chen

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex.

Nature

Avec: Zizhen Yao , Hanqing Liu , Fangming Xie , Stephan Fischer , Ricky S Adkins , Andrew I Aldridge , Seth A Ament , Anna Bartlett , M Margarita Behrens , Koen Van den Berge , Darren Bertagnolli , Hector Roux de Bézieux , Tommaso Biancalani , A Sina Booeshaghi , Héctor Corrada Bravo , Tamara Casper , Carlo Colantuoni , Jonathan Crabtree , Heather Creasy , Kirsten Crichton , Megan Crow , Nick Dee , Elizabeth L Dougherty , Wayne I Doyle , Sandrine Dudoit , Rongxin Fang , Victor Felix , Olivia Fong , Michelle Giglio , Jeff Goldy , Mike Hawrylycz , Brian R Herb , Ronna Hertzano , Xiaomeng Hou , Qiwen Hu , Jayaram Kancherla , Matthew Kroll , Kanan Lathia , Yang Eric Li , Jacinta D Lucero , Chongyuan Luo , Anup Mahurkar , Delissa McMillen , Naeem M Nadaf , Joseph R Nery , Thuc Nghi Nguyen , Sheng-Yong Niu , Vasilis Ntranos , Joshua Orvis , Julia K Osteen , Thanh Pham , Antonio Pinto-Duarte , Olivier Poirion , Sebastian Preissl , Elizabeth Purdom , Christine Rimorin , Davide Risso , Angeline C Rivkin , Kimberly Smith , Kelly Street , Josef Sulc , Valentine Svensson , Michael Tieu , Amy Torkelson , Herman Tung , Eeshit Dhaval Vaishnav , Charles R Vanderburg , Cindy van Velthoven , Xinxin Wang , Owen R White , Z Josh Huang , Peter V Kharchenko , Lior Pachter , John Ngai , Aviv Regev , Bosiljka Tasic , Joshua D Welch , Jesse Gillis , Evan Z Macosko , Bing Ren , Joseph R Ecker , Hongkui Zeng , Eran A Mukamel

Réseau de co-auteurs

Evan Z Macosko 11 collaborations

Fei Chen 4 collaborations

Charles Vanderburg 4 collaborations

Vahid Gazestani 4 collaborations

Karol S Balderrama 3 collaborations

Charles R Vanderburg 3 collaborations

Jonah Langlieb 2 collaborations

Nina S Sachdev 2 collaborations

Mukund Raj 2 collaborations

Evan Murray 2 collaborations

James T Webber 2 collaborations

Daniel Tward 2 collaborations

Chris Mezias 2 collaborations

Xu Li 2 collaborations

Dylan M Cable 2 collaborations

Tabitha Norton 2 collaborations

Partha Mitra 2 collaborations

Tushar Kamath 2 collaborations

S J Burris 2 collaborations

Brendan Rooney 2 collaborations

Antti Junkkari 2 collaborations

Tuomas Rauramaa 2 collaborations

Martine Therrien 2 collaborations

Matthew Tegtmeyer 2 collaborations

Sanna-Kaisa Herukka 2 collaborations

Abdulraouf Abdulraouf 2 collaborations

Mikko Hiltunen 2 collaborations

Ralda Nehme 2 collaborations

Tarja Malm 2 collaborations

Beth Stevens 2 collaborations

Ville Leinonen 2 collaborations

Wade G Regehr 2 collaborations

Daniel R Hochbaum 2 collaborations

Alexandra C Dubinsky 2 collaborations

Hannah C Farnsworth 2 collaborations

Lauren Hulshof 2 collaborations

Giona Kleinberg 2 collaborations

Amanda Urke 2 collaborations

Wengang Wang 2 collaborations

Richard Hakim 2 collaborations

Canaria Park 2 collaborations

Alyssa Solberg 2 collaborations

Yechan Yang 2 collaborations

Caroline Baynard 2 collaborations

Celia C Beron 2 collaborations

Allison E Girasole 2 collaborations

Lynne Chantranupong 2 collaborations

Shannon Prouty 2 collaborations

Ludwig Geistlinger 2 collaborations

Michael E Greenberg 2 collaborations

Gabriella L Boulting 2 collaborations

Bernardo L Sabatini 2 collaborations

Tongtong Zhao 1 collaboration

Zachary D Chiang 1 collaboration

Julia W Morriss 1 collaboration

Lindsay M LaFave 1 collaboration

Evan M Murray 1 collaboration

Isabella Del Priore 1 collaboration

Kevin Meli 1 collaboration

Caleb A Lareau 1 collaboration

Jilong Li 1 collaboration

Andrew S Earl 1 collaboration

Tyler Jacks 1 collaboration

Jason D Buenrostro 1 collaboration

Katelyn Flowers 1 collaboration

Antonios Dougalis 1 collaboration

Anssi Pelkonen 1 collaboration

Mireia Gomez-Budia 1 collaboration

Nelli-Noora Välimäki 1 collaboration

Anne M Koivisto 1 collaboration

Samuel E Marsh 1 collaboration

Tomas Osorno 1 collaboration

Stephanie Rudolph 1 collaboration

Tri Nguyen 1 collaboration

Velina Kozareva 1 collaboration

Aliya Norton 1 collaboration

Wei-Chung Allen Lee 1 collaboration

Keira Robertson 1 collaboration

Marissa Cortopassi 1 collaboration

Alexander Banks 1 collaboration

Thomas Scanlan 1 collaboration

Christopher H Chen 1 collaboration

Leannah N Newman 1 collaboration

Amanda P Stark 1 collaboration

Katherine E Bond 1 collaboration

Dawei Zhang 1 collaboration

Stefano Nardone 1 collaboration

Zhiyi Yao 1 collaboration

Kefiloe Mutume 1 collaboration

Isabella Flaquer 1 collaboration

Bradford B Lowell 1 collaboration

Sherry Lin 1 collaboration

Keiramarie Robertson 1 collaboration

Marissa D Cortopassi 1 collaboration

Alexander S Banks 1 collaboration

Thomas S Scanlan 1 collaboration

Sandeep Robert Datta 1 collaboration

Samuel Marsh 1 collaboration

Andrew J C Russell 1 collaboration

Jackson A Weir 1 collaboration

Matthew Shabet 1 collaboration

Vipin Kumar 1 collaboration

Sandeep Kambhampati 1 collaboration

Ruth Raichur 1 collaboration

Giovanni J Marrero 1 collaboration

Sophia Liu 1 collaboration

Vignesh Shanmugam 1 collaboration

Luyi Tian 1 collaboration

Catherine J Wu 1 collaboration

Charles H Yoon 1 collaboration

Zizhen Yao 1 collaboration

Hanqing Liu 1 collaboration

Fangming Xie 1 collaboration

Stephan Fischer 1 collaboration

Ricky S Adkins 1 collaboration

Andrew I Aldridge 1 collaboration

Seth A Ament 1 collaboration

Anna Bartlett 1 collaboration

M Margarita Behrens 1 collaboration

Koen Van den Berge 1 collaboration

Darren Bertagnolli 1 collaboration

Hector Roux de Bézieux 1 collaboration

Tommaso Biancalani 1 collaboration

A Sina Booeshaghi 1 collaboration

Héctor Corrada Bravo 1 collaboration

Tamara Casper 1 collaboration

Carlo Colantuoni 1 collaboration

Jonathan Crabtree 1 collaboration

Heather Creasy 1 collaboration

Kirsten Crichton 1 collaboration

Megan Crow 1 collaboration

Nick Dee 1 collaboration

Elizabeth L Dougherty 1 collaboration

Wayne I Doyle 1 collaboration

Sandrine Dudoit 1 collaboration

Rongxin Fang 1 collaboration

Victor Felix 1 collaboration

Olivia Fong 1 collaboration

Michelle Giglio 1 collaboration

Jeff Goldy 1 collaboration

Mike Hawrylycz 1 collaboration

Brian R Herb 1 collaboration

Ronna Hertzano 1 collaboration

Xiaomeng Hou 1 collaboration

Qiwen Hu 1 collaboration

Jayaram Kancherla 1 collaboration

Matthew Kroll 1 collaboration

Kanan Lathia 1 collaboration

Yang Eric Li 1 collaboration

Jacinta D Lucero 1 collaboration

Chongyuan Luo 1 collaboration

Anup Mahurkar 1 collaboration

Delissa McMillen 1 collaboration

Joseph R Nery 1 collaboration

Thuc Nghi Nguyen 1 collaboration

Sheng-Yong Niu 1 collaboration

Vasilis Ntranos 1 collaboration

Joshua Orvis 1 collaboration

Julia K Osteen 1 collaboration

Thanh Pham 1 collaboration

Antonio Pinto-Duarte 1 collaboration

Olivier Poirion 1 collaboration

Sebastian Preissl 1 collaboration

Elizabeth Purdom 1 collaboration

Christine Rimorin 1 collaboration

Davide Risso 1 collaboration

Angeline C Rivkin 1 collaboration

Kimberly Smith 1 collaboration

Kelly Street 1 collaboration

Josef Sulc 1 collaboration

Valentine Svensson 1 collaboration

Michael Tieu 1 collaboration

Amy Torkelson 1 collaboration

Herman Tung 1 collaboration

Eeshit Dhaval Vaishnav 1 collaboration

Cindy van Velthoven 1 collaboration

Xinxin Wang 1 collaboration

Owen R White 1 collaboration

Z Josh Huang 1 collaboration

Peter V Kharchenko 1 collaboration

Lior Pachter 1 collaboration

John Ngai 1 collaboration

Aviv Regev 1 collaboration

Bosiljka Tasic 1 collaboration

Joshua D Welch 1 collaboration

Jesse Gillis 1 collaboration

Bing Ren 1 collaboration

Joseph R Ecker 1 collaboration

Hongkui Zeng 1 collaboration

Eran A Mukamel 1 collaboration