Accueil
Nicolas Alcala
Nicolas Alcala
Affiliations
Genetic Cancer Susceptibility Group, Section of Genetics, International Agency for Research on Cancer (IARC-WHO), 150 cours Albert Thomas, 69008 Lyon, France.
Publications (15)
Needlestack: an ultra-sensitive variant caller for multi-sample next generation sequencing data.
NAR genomics and bioinformatics
Avec:
Tiffany M Delhomme
,
Patrice H Avogbe
,
Aurélie A G Gabriel
,
Nicolas Alcala
,
Noemie Leblay
,
Catherine Voegele
,
Maxime Vallée
,
Priscilia Chopard
,
Amélie Chabrier
,
Behnoush Abedi-Ardekani
,
Valérie Gaborieau
,
Ivana Holcatova
,
Vladimir Janout
,
Lenka Foretová
,
Sasa Milosavljevic
,
David Zaridze
,
Anush Mukeriya
,
Elisabeth Brambilla
,
Paul Brennan
,
Ghislaine Scelo
,
Lynnette Fernandez-Cuesta
,
Graham Byrnes
,
Florence L Calvez-Kelm
,
James D McKay
,
Matthieu Foll
Redefining malignant pleural mesothelioma types as a continuum uncovers immune-vascular interactions.
EBioMedicine
Avec:
Nicolas Alcala
,
Lise Mangiante
,
Nolwenn Le-Stang
,
Corinne E Gustafson
,
Sandrine Boyault
,
Francesca Damiola
,
Karine Alcala
,
Marie Brevet
,
Françoise Thivolet-Bejui
,
Cécile Blanc-Fournier
,
Jean-Philippe Le Rochais
,
Gaëtane Planchard
,
Nathalie Rousseau
,
Diane Damotte
,
Jean Claude Pairon
,
Marie Christine Copin
,
Arnaud Scherpereel
,
Eric Wasielewski
,
Laurence Wicquart
,
Stéphanie Lacomme
,
Jean-Michel Vignaud
,
Gaspard Ancelin
,
Cécile Girard
,
Christine Sagan
,
Christelle Bonnetaud
,
Véronique Hofman
,
Paul Hofman
,
Jérôme Mouroux
,
Vincent Thomas de Montpreville
,
Estelle Clermont-Taranchon
,
Julien Mazieres
,
Isabelle Rouquette
,
Hugues Begueret
,
Jean-Yves Blay
,
Sylvie Lantuejoul
,
Raphael Bueno
,
Christophe Caux
,
Nicolas Girard
,
James D McKay
,
Matthieu Foll
,
Françoise Galateau-Salle
,
Lynnette Fernandez-Cuesta
Molecular ecology
Avec:
Nicolas Alcala
,
Noah A Rosenberg
A molecular phenotypic map of malignant pleural mesothelioma.
GigaScience
Avec:
Alex Di Genova
,
Lise Mangiante
,
Alexandra Sexton-Oates
,
Catherine Voegele
,
Lynnette Fernandez-Cuesta
,
Nicolas Alcala
,
Matthieu Foll
A molecular map of lung neuroendocrine neoplasms.
GigaScience
Avec:
Aurélie A G Gabriel
,
Emilie Mathian
,
Lise Mangiante
,
Catherine Voegele
,
Vincent Cahais
,
Akram Ghantous
,
James D McKay
,
Nicolas Alcala
,
Lynnette Fernandez-Cuesta
,
Matthieu Foll
Coalescent Theory of Migration Network Motifs.
Molecular biology and evolution
Avec:
Nicolas Alcala
,
Amy Goldberg
,
Uma Ramakrishnan
,
Noah A Rosenberg
Mathematical constraints on
Philosophical transactions of the Royal Society of London. Series B, Biological sciences
Avec:
Nicolas Alcala
,
Noah A Rosenberg
Druggable growth dependencies and tumor evolution analysis in patient-derived organoids of neuroendocrine neoplasms from multiple body sites.
Cancer cell
Avec:
Talya L Dayton
,
Nicolas Alcala
,
Laura Moonen
,
Lisanne den Hartigh
,
Veerle Geurts
,
Lise Mangiante
,
Lisa Lap
,
Antonella F M Dost
,
Joep Beumer
,
Sonja Levy
,
Rachel S van Leeuwaarde
,
Wenzel M Hackeng
,
Kris Samsom
,
Catherine Voegele
,
Alexandra Sexton-Oates
,
Harry Begthel
,
Jeroen Korving
,
Lisa Hillen
,
Lodewijk A A Brosens
,
Sylvie Lantuejoul
,
Sridevi Jaksani
,
Niels F M Kok
,
Koen J Hartemink
,
Houke M Klomp
,
Inne H M Borel Rinkes
,
Anne-Marie Dingemans
,
Gerlof D Valk
,
Menno R Vriens
,
Wieneke Buikhuisen
,
José van den Berg
,
Margot Tesselaar
,
Jules Derks
,
Ernst Jan Speel
,
Matthieu Foll
,
Lynnette Fernández-Cuesta
,
Hans Clevers
EURACAN/IASLC Proposals for Updating the Histologic Classification of Pleural Mesothelioma: Towards a More Multidisciplinary Approach.
Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer
Avec:
Andrew G Nicholson
,
Jennifer L Sauter
,
Anna K Nowak
,
Hedy L Kindler
,
Ritu R Gill
,
Martine Remy-Jardin
,
Samuel G Armato
,
Lynnette Fernandez-Cuesta
,
Raphael Bueno
,
Nicolas Alcala
,
Matthieu Foll
,
Harvey Pass
,
Richard Attanoos
,
Paul Baas
,
Mary Beth Beasley
,
Luka Brcic
,
Kelly J Butnor
,
Lucian R Chirieac
,
Andrew Churg
,
Pierre Courtiol
,
Sanja Dacic
,
Marc De Perrot
,
Thomas Frauenfelder
,
Allen Gibbs
,
Fred R Hirsch
,
Kenzo Hiroshima
,
Aliya Husain
,
Sonja Klebe
,
Sylvie Lantuejoul
,
Andre Moreira
,
Isabelle Opitz
,
Maurice Perol
,
Anja Roden
,
Victor Roggli
,
Arnaud Scherpereel
,
Frank Tirode
,
Henry Tazelaar
,
William D Travis
,
Ming-Sound Tsao
,
Paul van Schil
,
Jean Michel Vignaud
,
Birgit Weynand
,
Loic Lang-Lazdunski
,
Ian Cree
,
Valerie W Rusch
,
Nicolas Girard
,
Francoise Galateau-Salle
Integrative and comparative genomic analyses identify clinically relevant pulmonary carcinoid groups and unveil the supra-carcinoids.
Nature communications
Avec:
N Alcala
,
N Leblay
,
A A G Gabriel
,
L Mangiante
,
D Hervas
,
T Giffon
,
A S Sertier
,
A Ferrari
,
J Derks
,
A Ghantous
,
T M Delhomme
,
A Chabrier
,
C Cuenin
,
B Abedi-Ardekani
,
A Boland
,
R Olaso
,
V Meyer
,
J Altmuller
,
F Le Calvez-Kelm
,
G Durand
,
C Voegele
,
S Boyault
,
L Moonen
,
N Lemaitre
,
P Lorimier
,
A C Toffart
,
A Soltermann
,
J H Clement
,
J Saenger
,
J K Field
,
M Brevet
,
C Blanc-Fournier
,
F Galateau-Salle
,
N Le Stang
,
P A Russell
,
G Wright
,
G Sozzi
,
U Pastorino
,
S Lacomme
,
J M Vignaud
,
V Hofman
,
P Hofman
,
O T Brustugun
,
M Lund-Iversen
,
V Thomas de Montpreville
,
L A Muscarella
,
P Graziano
,
H Popper
,
J Stojsic
,
J F Deleuze
,
Z Herceg
,
A Viari
,
P Nuernberg
,
G Pelosi
,
A M C Dingemans
,
M Milione
,
L Roz
,
L Brcic
,
M Volante
,
M G Papotti
,
C Caux
,
J Sandoval
,
H Hernandez-Vargas
,
E Brambilla
,
E J M Speel
,
N Girard
,
S Lantuejoul
,
J D McKay
,
M Foll
,
L Fernandez-Cuesta
Multiomic analysis of malignant pleural mesothelioma identifies molecular axes and specialized tumor profiles driving intertumor heterogeneity.
Nature genetics
Avec:
Lise Mangiante
,
Nicolas Alcala
,
Alexandra Sexton-Oates
,
Alex Di Genova
,
Abel Gonzalez-Perez
,
Azhar Khandekar
,
Erik N Bergstrom
,
Jaehee Kim
,
Xiran Liu
,
Ricardo Blazquez-Encinas
,
Colin Giacobi
,
Nolwenn Le Stang
,
Sandrine Boyault
,
Cyrille Cuenin
,
Severine Tabone-Eglinger
,
Francesca Damiola
,
Catherine Voegele
,
Maude Ardin
,
Marie-Cecile Michallet
,
Lorraine Soudade
,
Tiffany M Delhomme
,
Arnaud Poret
,
Marie Brevet
,
Marie-Christine Copin
,
Sophie Giusiano-Courcambeck
,
Diane Damotte
,
Cecile Girard
,
Veronique Hofman
,
Paul Hofman
,
Jérôme Mouroux
,
Charlotte Cohen
,
Stephanie Lacomme
,
Julien Mazieres
,
Vincent Thomas de Montpreville
,
Corinne Perrin
,
Gaetane Planchard
,
Nathalie Rousseau
,
Isabelle Rouquette
,
Christine Sagan
,
Arnaud Scherpereel
,
Francoise Thivolet
,
Jean-Michel Vignaud
,
Didier Jean
,
Anabelle Gilg Soit Ilg
,
Robert Olaso
,
Vincent Meyer
,
Anne Boland-Auge
,
Jean-Francois Deleuze
,
Janine Altmuller
,
Peter Nuernberg
,
Alejandro Ibáñez-Costa
,
Justo P Castaño
,
Sylvie Lantuejoul
,
Akram Ghantous
,
Charles Maussion
,
Pierre Courtiol
,
Hector Hernandez-Vargas
,
Christophe Caux
,
Nicolas Girard
,
Nuria Lopez-Bigas
,
Ludmil B Alexandrov
,
Françoise Galateau-Salle
,
Matthieu Foll
,
Lynnette Fernandez-Cuesta
Use of stochastic patch occupancy models in the California red-legged frog for Bayesian inference regarding past events and future persistence.
Conservation biology : the journal of the Society for Conservation Biology
Avec:
Nicolas Alcala
,
Alan E Launer
,
Michael F Westphal
,
Richard Seymour
,
Esther M Cole
,
Noah A Rosenberg
Challenges in lung and thoracic pathology: molecular advances in the classification of pleural mesotheliomas.
Virchows Archiv : an international journal of pathology
Avec:
Lynnette Fernandez-Cuesta
,
Lise Mangiante
,
Nicolas Alcala
,
Matthieu Foll
FSTruct: An F
Molecular ecology resources
Avec:
Maike L Morrison
,
Nicolas Alcala
,
Noah A Rosenberg
Multi-omic dataset of patient-derived tumor organoids of neuroendocrine neoplasms.
GigaScience
Avec:
Nicolas Alcala
,
Catherine Voegele
,
Lise Mangiante
,
Alexandra Sexton-Oates
,
Hans Clevers
,
Lynnette Fernandez-Cuesta
,
Talya L Dayton
,
Matthieu Foll
Réseau de co-auteurs
Matthieu Foll
9 collaborations
Lynnette Fernandez-Cuesta
8 collaborations
Lise Mangiante
7 collaborations
Catherine Voegele
6 collaborations
Noah A Rosenberg
5 collaborations
Sylvie Lantuejoul
4 collaborations
Alexandra Sexton-Oates
4 collaborations
James D McKay
3 collaborations
Arnaud Scherpereel
3 collaborations
Nicolas Girard
3 collaborations
Tiffany M Delhomme
2 collaborations
Aurélie A G Gabriel
2 collaborations
Sandrine Boyault
2 collaborations
Francesca Damiola
2 collaborations
Marie Brevet
2 collaborations
Nathalie Rousseau
2 collaborations
Diane Damotte
2 collaborations
Jean-Michel Vignaud
2 collaborations
Christine Sagan
2 collaborations
Paul Hofman
2 collaborations
Jérôme Mouroux
2 collaborations
Vincent Thomas de Montpreville
2 collaborations
Julien Mazieres
2 collaborations
Isabelle Rouquette
2 collaborations
Raphael Bueno
2 collaborations
Christophe Caux
2 collaborations
Françoise Galateau-Salle
2 collaborations
Alex Di Genova
2 collaborations
Akram Ghantous
2 collaborations
Talya L Dayton
2 collaborations
Hans Clevers
2 collaborations
Pierre Courtiol
2 collaborations
Patrice H Avogbe
1 collaboration
Noemie Leblay
1 collaboration
Maxime Vallée
1 collaboration
Priscilia Chopard
1 collaboration
Amélie Chabrier
1 collaboration
Behnoush Abedi-Ardekani
1 collaboration
Valérie Gaborieau
1 collaboration
Ivana Holcatova
1 collaboration
Vladimir Janout
1 collaboration
Lenka Foretová
1 collaboration
Sasa Milosavljevic
1 collaboration
David Zaridze
1 collaboration
Anush Mukeriya
1 collaboration
Elisabeth Brambilla
1 collaboration
Paul Brennan
1 collaboration
Ghislaine Scelo
1 collaboration
Graham Byrnes
1 collaboration
Florence L Calvez-Kelm
1 collaboration
Nolwenn Le-Stang
1 collaboration
Corinne E Gustafson
1 collaboration
Karine Alcala
1 collaboration
Françoise Thivolet-Bejui
1 collaboration
Cécile Blanc-Fournier
1 collaboration
Jean-Philippe Le Rochais
1 collaboration
Gaëtane Planchard
1 collaboration
Jean Claude Pairon
1 collaboration
Marie Christine Copin
1 collaboration
Eric Wasielewski
1 collaboration
Laurence Wicquart
1 collaboration
Stéphanie Lacomme
1 collaboration
Gaspard Ancelin
1 collaboration
Cécile Girard
1 collaboration
Christelle Bonnetaud
1 collaboration
Véronique Hofman
1 collaboration
Estelle Clermont-Taranchon
1 collaboration
Hugues Begueret
1 collaboration
Jean-Yves Blay
1 collaboration
Emilie Mathian
1 collaboration
Vincent Cahais
1 collaboration
Amy Goldberg
1 collaboration
Uma Ramakrishnan
1 collaboration
Laura Moonen
1 collaboration
Lisanne den Hartigh
1 collaboration
Veerle Geurts
1 collaboration
Lisa Lap
1 collaboration
Antonella F M Dost
1 collaboration
Joep Beumer
1 collaboration
Sonja Levy
1 collaboration
Rachel S van Leeuwaarde
1 collaboration
Wenzel M Hackeng
1 collaboration
Kris Samsom
1 collaboration
Harry Begthel
1 collaboration
Jeroen Korving
1 collaboration
Lisa Hillen
1 collaboration
Lodewijk A A Brosens
1 collaboration
Sridevi Jaksani
1 collaboration
Niels F M Kok
1 collaboration
Koen J Hartemink
1 collaboration
Houke M Klomp
1 collaboration
Inne H M Borel Rinkes
1 collaboration
Anne-Marie Dingemans
1 collaboration
Gerlof D Valk
1 collaboration
Menno R Vriens
1 collaboration
Wieneke Buikhuisen
1 collaboration
José van den Berg
1 collaboration
Margot Tesselaar
1 collaboration
Jules Derks
1 collaboration
Ernst Jan Speel
1 collaboration
Lynnette Fernández-Cuesta
1 collaboration
Andrew G Nicholson
1 collaboration
Jennifer L Sauter
1 collaboration
Anna K Nowak
1 collaboration
Hedy L Kindler
1 collaboration
Ritu R Gill
1 collaboration
Martine Remy-Jardin
1 collaboration
Samuel G Armato
1 collaboration
Harvey Pass
1 collaboration
Richard Attanoos
1 collaboration
Paul Baas
1 collaboration
Mary Beth Beasley
1 collaboration
Luka Brcic
1 collaboration
Kelly J Butnor
1 collaboration
Lucian R Chirieac
1 collaboration
Andrew Churg
1 collaboration
Sanja Dacic
1 collaboration
Marc De Perrot
1 collaboration
Thomas Frauenfelder
1 collaboration
Allen Gibbs
1 collaboration
Fred R Hirsch
1 collaboration
Kenzo Hiroshima
1 collaboration
Aliya Husain
1 collaboration
Sonja Klebe
1 collaboration
Andre Moreira
1 collaboration
Isabelle Opitz
1 collaboration
Maurice Perol
1 collaboration
Anja Roden
1 collaboration
Victor Roggli
1 collaboration
Frank Tirode
1 collaboration
Henry Tazelaar
1 collaboration
William D Travis
1 collaboration
Ming-Sound Tsao
1 collaboration
Paul van Schil
1 collaboration
Jean Michel Vignaud
1 collaboration
Birgit Weynand
1 collaboration
Loic Lang-Lazdunski
1 collaboration
Ian Cree
1 collaboration
Valerie W Rusch
1 collaboration
Francoise Galateau-Salle
1 collaboration
N Alcala
1 collaboration
N Leblay
1 collaboration
A A G Gabriel
1 collaboration
L Mangiante
1 collaboration
D Hervas
1 collaboration
T Giffon
1 collaboration
A S Sertier
1 collaboration
A Ferrari
1 collaboration
J Derks
1 collaboration
A Ghantous
1 collaboration
T M Delhomme
1 collaboration
A Chabrier
1 collaboration
C Cuenin
1 collaboration
B Abedi-Ardekani
1 collaboration
A Boland
1 collaboration
R Olaso
1 collaboration
V Meyer
1 collaboration
J Altmuller
1 collaboration
F Le Calvez-Kelm
1 collaboration
G Durand
1 collaboration
C Voegele
1 collaboration
S Boyault
1 collaboration
L Moonen
1 collaboration
N Lemaitre
1 collaboration
P Lorimier
1 collaboration
A C Toffart
1 collaboration
A Soltermann
1 collaboration
J H Clement
1 collaboration
J Saenger
1 collaboration
J K Field
1 collaboration
M Brevet
1 collaboration
C Blanc-Fournier
1 collaboration
F Galateau-Salle
1 collaboration
N Le Stang
1 collaboration
P A Russell
1 collaboration
G Wright
1 collaboration
G Sozzi
1 collaboration
U Pastorino
1 collaboration
S Lacomme
1 collaboration
J M Vignaud
1 collaboration
V Hofman
1 collaboration
P Hofman
1 collaboration
O T Brustugun
1 collaboration
M Lund-Iversen
1 collaboration
V Thomas de Montpreville
1 collaboration
L A Muscarella
1 collaboration
P Graziano
1 collaboration
H Popper
1 collaboration
J Stojsic
1 collaboration
J F Deleuze
1 collaboration
Z Herceg
1 collaboration
A Viari
1 collaboration
P Nuernberg
1 collaboration
G Pelosi
1 collaboration
A M C Dingemans
1 collaboration
M Milione
1 collaboration
L Roz
1 collaboration
L Brcic
1 collaboration
M Volante
1 collaboration
M G Papotti
1 collaboration
C Caux
1 collaboration
J Sandoval
1 collaboration
H Hernandez-Vargas
1 collaboration
E Brambilla
1 collaboration
E J M Speel
1 collaboration
N Girard
1 collaboration
S Lantuejoul
1 collaboration
J D McKay
1 collaboration
M Foll
1 collaboration
L Fernandez-Cuesta
1 collaboration
Abel Gonzalez-Perez
1 collaboration
Azhar Khandekar
1 collaboration
Erik N Bergstrom
1 collaboration
Jaehee Kim
1 collaboration
Xiran Liu
1 collaboration
Ricardo Blazquez-Encinas
1 collaboration
Colin Giacobi
1 collaboration
Nolwenn Le Stang
1 collaboration
Cyrille Cuenin
1 collaboration
Severine Tabone-Eglinger
1 collaboration
Maude Ardin
1 collaboration
Marie-Cecile Michallet
1 collaboration
Lorraine Soudade
1 collaboration
Arnaud Poret
1 collaboration
Marie-Christine Copin
1 collaboration
Sophie Giusiano-Courcambeck
1 collaboration
Cecile Girard
1 collaboration
Veronique Hofman
1 collaboration
Charlotte Cohen
1 collaboration
Stephanie Lacomme
1 collaboration
Corinne Perrin
1 collaboration
Gaetane Planchard
1 collaboration
Francoise Thivolet
1 collaboration
Didier Jean
1 collaboration
Anabelle Gilg Soit Ilg
1 collaboration
Robert Olaso
1 collaboration
Vincent Meyer
1 collaboration
Anne Boland-Auge
1 collaboration
Jean-Francois Deleuze
1 collaboration
Janine Altmuller
1 collaboration
Peter Nuernberg
1 collaboration
Alejandro Ibáñez-Costa
1 collaboration
Justo P Castaño
1 collaboration
Charles Maussion
1 collaboration
Hector Hernandez-Vargas
1 collaboration
Nuria Lopez-Bigas
1 collaboration
Ludmil B Alexandrov
1 collaboration
Alan E Launer
1 collaboration
Michael F Westphal
1 collaboration
Richard Seymour
1 collaboration
Esther M Cole
1 collaboration
Maike L Morrison
1 collaboration