Nir Neumark

Affiliations

Section of Pulmonary, Critical Care and Sleep Medicine, Yale University, New Haven, CT 06520, USA.
Interdepartmental Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520, USA.

ORCID: 0000-0002-5560-6136

Publications (8)

Single-cell connectomic analysis of adult mammalian lungs.

Science advances

Avec: Micha Sam Brickman Raredon , Taylor Sterling Adams , Yasir Suhail , Jonas Christian Schupp , Sergio Poli , Nir Neumark , Katherine L Leiby , Allison Marie Greaney , Yifan Yuan , Corey Horien , George Linderman , Alexander J Engler , Daniel J Boffa , Yuval Kluger , Ivan O Rosas , Andre Levchenko , Naftali Kaminski , Laura E Niklason

Deep metric learning-based image retrieval system for chest radiograph and its clinical applications in COVID-19.

Medical image analysis

Avec: Aoxiao Zhong , Xiang Li , Dufan Wu , Hui Ren , Kyungsang Kim , Younggon Kim , Varun Buch , Nir Neumark , Bernardo Bizzo , Won Young Tak , Soo Young Park , Yu Rim Lee , Min Kyu Kang , Jung Gil Park , Byung Seok Kim , Woo Jin Chung , Ning Guo , Ittai Dayan , Mannudeep K Kalra , Quanzheng Li

Single-Cell Profiling Reveals Immune Aberrations in Progressive Idiopathic Pulmonary Fibrosis.

American journal of respiratory and critical care medicine

Avec: Avraham Unterman , Amy Y Zhao , Nir Neumark , Jonas C Schupp , Farida Ahangari , Carlos Cosme , Prapti Sharma , Jasper Flint , Yan Stein , Changwan Ryu , Genta Ishikawa , Tomokazu S Sumida , Jose L Gomez , Jose D Herazo-Maya , Charles S Dela Cruz , Erica L Herzog , Naftali Kaminski

Radiologist-Trained and -Tested (R2.2.4) Deep Learning Models for Identifying Anatomical Landmarks in Chest CT.

Diagnostics (Basel, Switzerland)

Avec: Parisa Kaviani , Bernardo C Bizzo , Subba R Digumarthy , Giridhar Dasegowda , Lina Karout , James Hillis , Nir Neumark , Mannudeep K Kalra , Keith J Dreyer

Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis.

Science advances

Avec: Taylor S Adams , Jonas C Schupp , Sergio Poli , Ehab A Ayaub , Nir Neumark , Farida Ahangari , Sarah G Chu , Benjamin A Raby , Giuseppe DeIuliis , Michael Januszyk , Qiaonan Duan , Heather A Arnett , Asim Siddiqui , George R Washko , Robert Homer , Xiting Yan , Ivan O Rosas , Naftali Kaminski

Macrophage-derived netrin-1 drives adrenergic nerve-associated lung fibrosis.

The Journal of clinical investigation

Avec: Ruijuan Gao , Xueyan Peng , Carrighan Perry , Huanxing Sun , Aglaia Ntokou , Changwan Ryu , Jose L Gomez , Benjamin C Reeves , Anjali Walia , Naftali Kaminski , Nir Neumark , Genta Ishikawa , Katharine E Black , Lida P Hariri , Meagan W Moore , Mridu Gulati , Robert J Homer , Daniel M Greif , Holger K Eltzschig , Erica L Herzog

Severity and Consolidation Quantification of COVID-19 From CT Images Using Deep Learning Based on Hybrid Weak Labels.

IEEE journal of biomedical and health informatics

Avec: Dufan Wu , Kuang Gong , Chiara Daniela Arru , Fatemeh Homayounieh , Bernardo Bizzo , Varun Buch , Hui Ren , Kyungsang Kim , Nir Neumark , Pengcheng Xu , Zhiyuan Liu , Wei Fang , Nuobei Xie , Won Young Tak , Soo Young Park , Yu Rim Lee , Min Kyu Kang , Jung Gil Park , Alessandro Carriero , Luca Saba , Mahsa Masjedi , Hamidreza Talari , Rosa Babaei , Hadi Karimi Mobin , Shadi Ebrahimian , Ittai Dayan , Mannudeep K Kalra , Quanzheng Li

Single-cell profiling reveals immune aberrations in progressive idiopathic pulmonary fibrosis.

medRxiv : the preprint server for health sciences

Avec: Avraham Unterman , Amy Y Zhao , Nir Neumark , Jonas C Schupp , Farida Ahangari , Carlos Cosme , Prapti Sharma , Jasper Flint , Yan Stein , Changwan Ryu , Genta Ishikawa , Tomokazu S Sumida , Jose L Gomez , Jose Herazo-Maya , Charles S Dela Cruz , Erica L Herzog , Naftali Kaminski

Réseau de co-auteurs

Naftali Kaminski 5 collaborations

Mannudeep K Kalra 3 collaborations

Jonas C Schupp 3 collaborations

Farida Ahangari 3 collaborations

Changwan Ryu 3 collaborations

Genta Ishikawa 3 collaborations

Jose L Gomez 3 collaborations

Erica L Herzog 3 collaborations

Sergio Poli 2 collaborations

Ivan O Rosas 2 collaborations

Dufan Wu 2 collaborations

Hui Ren 2 collaborations

Kyungsang Kim 2 collaborations

Varun Buch 2 collaborations

Bernardo Bizzo 2 collaborations

Won Young Tak 2 collaborations

Soo Young Park 2 collaborations

Yu Rim Lee 2 collaborations

Min Kyu Kang 2 collaborations

Jung Gil Park 2 collaborations

Ittai Dayan 2 collaborations

Quanzheng Li 2 collaborations

Avraham Unterman 2 collaborations

Amy Y Zhao 2 collaborations

Carlos Cosme 2 collaborations

Prapti Sharma 2 collaborations

Jasper Flint 2 collaborations

Yan Stein 2 collaborations

Tomokazu S Sumida 2 collaborations

Charles S Dela Cruz 2 collaborations

Micha Sam Brickman Raredon 1 collaboration

Taylor Sterling Adams 1 collaboration

Yasir Suhail 1 collaboration

Jonas Christian Schupp 1 collaboration

Katherine L Leiby 1 collaboration

Allison Marie Greaney 1 collaboration

Yifan Yuan 1 collaboration

Corey Horien 1 collaboration

George Linderman 1 collaboration

Alexander J Engler 1 collaboration

Daniel J Boffa 1 collaboration

Yuval Kluger 1 collaboration

Andre Levchenko 1 collaboration

Laura E Niklason 1 collaboration

Aoxiao Zhong 1 collaboration

Xiang Li 1 collaboration

Younggon Kim 1 collaboration

Byung Seok Kim 1 collaboration

Woo Jin Chung 1 collaboration

Ning Guo 1 collaboration

Jose D Herazo-Maya 1 collaboration

Parisa Kaviani 1 collaboration

Bernardo C Bizzo 1 collaboration

Subba R Digumarthy 1 collaboration

Giridhar Dasegowda 1 collaboration

Lina Karout 1 collaboration

James Hillis 1 collaboration

Keith J Dreyer 1 collaboration

Taylor S Adams 1 collaboration

Ehab A Ayaub 1 collaboration

Sarah G Chu 1 collaboration

Benjamin A Raby 1 collaboration

Giuseppe DeIuliis 1 collaboration

Michael Januszyk 1 collaboration

Qiaonan Duan 1 collaboration

Heather A Arnett 1 collaboration

Asim Siddiqui 1 collaboration

George R Washko 1 collaboration

Robert Homer 1 collaboration

Xiting Yan 1 collaboration

Ruijuan Gao 1 collaboration

Xueyan Peng 1 collaboration

Carrighan Perry 1 collaboration

Huanxing Sun 1 collaboration

Aglaia Ntokou 1 collaboration

Benjamin C Reeves 1 collaboration

Anjali Walia 1 collaboration

Katharine E Black 1 collaboration

Lida P Hariri 1 collaboration

Meagan W Moore 1 collaboration

Mridu Gulati 1 collaboration

Robert J Homer 1 collaboration

Daniel M Greif 1 collaboration

Holger K Eltzschig 1 collaboration

Kuang Gong 1 collaboration

Chiara Daniela Arru 1 collaboration

Fatemeh Homayounieh 1 collaboration

Pengcheng Xu 1 collaboration

Zhiyuan Liu 1 collaboration

Wei Fang 1 collaboration

Nuobei Xie 1 collaboration

Alessandro Carriero 1 collaboration

Luca Saba 1 collaboration

Mahsa Masjedi 1 collaboration

Hamidreza Talari 1 collaboration

Rosa Babaei 1 collaboration

Hadi Karimi Mobin 1 collaboration

Shadi Ebrahimian 1 collaboration

Jose Herazo-Maya 1 collaboration