Rachel M Pyke

Affiliations

School of Medicine, University of California, San Diego, 9500 Gilman Dr., San Diego, CA 92093, USA, ramarty@ucsd.edu.

Publications (6)

Elevated neoantigen levels in tumors with somatic mutations in the HLA-A, HLA-B, HLA-C and B2M genes.

BMC medical genomics

Avec: Andrea Castro , Kivilcim Ozturk , Rachel Marty Pyke , Su Xian , Maurizio Zanetti , Hannah Carter

Computational KIR copy number discovery reveals interaction between inhibitory receptor burden and survival.

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing

Avec: Rachel M Pyke , Raphael Genolet , Alexandre Harari , George Coukos , David Gfeller , Hannah Carter

Strength of immune selection in tumors varies with sex and age.

Nature communications

Avec: Andrea Castro , Rachel Marty Pyke , Xinlian Zhang , Wesley Kurt Thompson , Chi-Ping Day , Ludmil B Alexandrov , Maurizio Zanetti , Hannah Carter

A machine learning algorithm with subclonal sensitivity reveals widespread pan-cancer human leukocyte antigen loss of heterozygosity.

Nature communications

Avec: Rachel Marty Pyke , Dattatreya Mellacheruvu , Steven Dea , Charles W Abbott , Lee McDaniel , Devayani P Bhave , Simo V Zhang , Eric Levy , Gabor Bartha , John West , Michael P Snyder , Richard O Chen , Sean Michael Boyle

Precision Neoantigen Discovery Using Large-scale Immunopeptidomes and Composite Modeling of MHC Peptide Presentation.

Molecular & cellular proteomics : MCP

Avec: Rachel Marty Pyke , Dattatreya Mellacheruvu , Steven Dea , Charles W Abbott , Simo V Zhang , Nick A Phillips , Jason Harris , Gabor Bartha , Sejal Desai , Rena McClory , John West , Michael P Snyder , Richard Chen , Sean Michael Boyle

MHC-I genotype and tumor mutational burden predict response to immunotherapy.

Genome medicine

Avec: Aaron M Goodman , Andrea Castro , Rachel Marty Pyke , Ryosuke Okamura , Shumei Kato , Paul Riviere , Garrett Frampton , Ethan Sokol , Xinlian Zhang , Edward D Ball , Hannah Carter , Razelle Kurzrock

Réseau de co-auteurs

Rachel Marty Pyke 5 collaborations

Hannah Carter 4 collaborations

Andrea Castro 3 collaborations

Maurizio Zanetti 2 collaborations

Xinlian Zhang 2 collaborations

Dattatreya Mellacheruvu 2 collaborations

Steven Dea 2 collaborations

Charles W Abbott 2 collaborations

Simo V Zhang 2 collaborations

Gabor Bartha 2 collaborations

John West 2 collaborations

Michael P Snyder 2 collaborations

Sean Michael Boyle 2 collaborations

Kivilcim Ozturk 1 collaboration

Su Xian 1 collaboration

Raphael Genolet 1 collaboration

Alexandre Harari 1 collaboration

George Coukos 1 collaboration

David Gfeller 1 collaboration

Wesley Kurt Thompson 1 collaboration

Chi-Ping Day 1 collaboration

Ludmil B Alexandrov 1 collaboration

Lee McDaniel 1 collaboration

Devayani P Bhave 1 collaboration

Eric Levy 1 collaboration

Richard O Chen 1 collaboration

Nick A Phillips 1 collaboration

Jason Harris 1 collaboration

Sejal Desai 1 collaboration

Rena McClory 1 collaboration

Richard Chen 1 collaboration

Aaron M Goodman 1 collaboration

Ryosuke Okamura 1 collaboration

Shumei Kato 1 collaboration

Paul Riviere 1 collaboration

Garrett Frampton 1 collaboration

Ethan Sokol 1 collaboration

Edward D Ball 1 collaboration

Razelle Kurzrock 1 collaboration