Shiro Urayama

Affiliations

Division of Gastroenterology and Hepatology, University of California Davis, Davis, CA, USA.

Publications (34)

Comparison of Endoscopic Ultrasound Biopsy Needles for Endoscopic Ultrasound-Guided Liver Biopsy.

Clinical endoscopy

Avec: Armen Eskandari , Patrick Koo , Heejung Bang , Dorina Gui , Shiro Urayama

Complete genome sequence of Sikte (Sitke) waterborne virus, a member of the genus Tombusvirus.

Archives of virology

Avec: Tamaki Uehara-Ichiki , Syun-Ichi Urayama , Miho Hirai , Yoshihiro Takaki , Takuro Nunoura , Masashi Fujinaga , Kaoru Hanada

Discovery of divided RdRp sequences and a hitherto unknown genomic complexity in fungal viruses.

Virus evolution

Avec: Yuto Chiba , Sayoko Oiki , Takashi Yaguchi , Syun-Ichi Urayama , Daisuke Hagiwara

Degenerate PCR Targeting the Major Capsid Protein Gene of HcRNAV and Related Viruses.

Microbes and environments

Avec: Michiko Takahashi , Kei Wada , Syun-Ichi Urayama , Yuichi Masuda , Keizo Nagasaki

DsRNA sequencing revealed a previously missed terminal sequence of a +ssRNA virus that infects dinoflagellate Heterocapsa circularisquama.

Virus genes

Avec: Michiko Takahashi , Yuichi Masuda , Yuto Chiba , Syun-Ichi Urayama , Keizo Nagasaki

Seven new mycoviruses identified from isolated ascomycetous macrofungi.

Virus research

Avec: Yan-Jie Zhao , Tsuyoshi Hosoya , Syunichi Urayama , Daisuke Hagiwara

Efficient elimination of RNA mycoviruses in

Frontiers in microbiology

Avec: Ayano Ikeda , Yuto Chiba , Misa Kuroki , Syun-Ichi Urayama , Daisuke Hagiwara

Eukaryotic Microbial RNA Viruses-Acute or Persistent? Insights into Their Function in the Aquatic Ecosystem.

Microbes and environments

Avec: Syun-Ichi Urayama , Yoshihiro Takaki , Yuto Chiba , Yanjie Zhao , Misa Kuroki , Daisuke Hagiwara , Takuro Nunoura

Magnaporthe oryzae chrysovirus 1 strain D confers growth inhibition to the host fungus and exhibits multiform viral structural proteins.

Virology

Avec: Tomoya Higashiura , Yu Katoh , Syun-Ichi Urayama , Osamu Hayashi , Mitsuhiro Aihara , Toshiyuki Fukuhara , Shin-Ichi Fuji , Takashi Kobayashi , Shu Hase , Tsutomu Arie , Tohru Teraoka , Ken Komatsu , Hiromitsu Moriyama

Correction: Axial variation of deoxyhemoglobin density as a source of the low-frequency time lag structure in blood oxygenation level-dependent signals.

PloS one

Avec: Toshihiko Aso , Shinnichi Urayama , Hidenao Fukuyama , Toshiya Murai

Viral RNA Genomes Identified from Marine Macroalgae and a Diatom.

Microbes and environments

Avec: Yuto Chiba , Yuji Tomaru , Hiromori Shimabukuro , Kei Kimura , Miho Hirai , Yoshihiro Takaki , Daisuke Hagiwara , Takuro Nunoura , Syun-Ichi Urayama

Intimate genetic relationships and fungicide resistance in multiple strains of Aspergillus fumigatus isolated from a plant bulb.

Environmental microbiology

Avec: Hiroki Takahashi , Sayoko Oiki , Yoko Kusuya , Syun-Ichi Urayama , Daisuke Hagiwara

Wide distribution of resistance to the fungicides fludioxonil and iprodione in Penicillium species.

PloS one

Avec: Sayoko Oiki , Takashi Yaguchi , Syun-Ichi Urayama , Daisuke Hagiwara

Detection and Characterization of RNA Viruses in Red Macroalgae (Bangiaceae) and Their Food Product (Nori Sheets).

Microbes and environments

Avec: Yukino Mizutani , Yuto Chiba , Syun-Ichi Urayama , Yuji Tomaru , Daisuke Hagiwara , Kei Kimura

Unique insertion/deletion polymorphisms within histidine-rich region of histidine-rich glycoprotein in Thoroughbred horses.

Scientific reports

Avec: Ryo Muko , Tomoya Sunouchi , Shuntaro Urayama , Yuko Toishi , Kanichi Kusano , Hiroaki Sato , Masanori Muranaka , Taekyun Shin , Masa-Aki Oikawa , Yoshinobu Ojima , Mohammad Ali , Yoshihiro Nomura , Hiroshi Matsuda , Akane Tanaka

Multiregional Sequencing Analysis Reveals Extensive Genetic Heterogeneity in Gastric Tumors from Latinos.

Cancer research communications

Avec: Ted W Toal , Ana P Estrada-Florez , Guadalupe M Polanco-Echeverry , Ruta M Sahasrabudhe , Paul C Lott , John J Suarez-Olaya , Alix A Guevara-Tique , Sienna Rocha , Alexa Morales-Arana , Fabian Castro-Valencia , Shiro Urayama , Amanda Kirane , Dongguang Wei , Nora Rios-Sarabia , Rafael Medrano , Alejandra Mantilla , Magdalena Echeverry de Polanco , Javier Torres , Mabel E Bohorquez-Lozano , Luis G Carvajal-Carmona

Splitting of RNA-dependent RNA polymerase is common in

Virus evolution

Avec: Yuto Chiba , Sayoko Oiki , Yanjie Zhao , Yuriko Nagano , Syun-Ichi Urayama , Daisuke Hagiwara

Distinct groups of RNA viruses associated with thermoacidophilic bacteria.

bioRxiv : the preprint server for biology

Avec: Syun-Ichi Urayama , Akihito Fukudome , Miho Hirai , Tomoyo Okumura , Yosuke Nishimura , Yoshihiro Takaki , Norio Kurosawa , Eugene V Koonin , Mart Krupovic , Takuro Nunoura

Interspecies Genomic Variation and Transcriptional Activeness of Secondary Metabolism-Related Genes in

Frontiers in fungal biology

Avec: Hiroki Takahashi , Maiko Umemura , Akihiro Ninomiya , Yoko Kusuya , Masaaki Shimizu , Syun-Ichi Urayama , Akira Watanabe , Katsuhiko Kamei , Takashi Yaguchi , Daisuke Hagiwara

Greetings from virologists to mycologists: A review outlining viruses that live in fungi.

Mycoscience

Avec: Syun-Ichi Urayama , Yan-Jie Zhao , Misa Kuroki , Yuto Chiba , Akihiro Ninomiya , Daisuke Hagiwara

Prognostic value of power Doppler ultrasonography for equine superficial digital flexor tendon injury in Thoroughbred racehorses.

Veterinary journal (London, England : 1997)

Avec: N Tamura , E Yoshihara , K Seki , N Mae , K Kodaira , M Iimori , Y Yamazaki , H Mita , S Urayama , T Kuroda , M Ohta , Y Kasashima

Mycovirus-Induced Tenuazonic Acid Production in a Rice Blast Fungus

Frontiers in microbiology

Avec: Akihiro Ninomiya , Syun-Ichi Urayama , Rei Suo , Shiro Itoi , Shin-Ichi Fuji , Hiromitsu Moriyama , Daisuke Hagiwara

A venous mechanism of ventriculomegaly shared between traumatic brain injury and normal ageing.

Brain : a journal of neurology

Avec: Toshihiko Aso , Genichi Sugihara , Toshiya Murai , Shiho Ubukata , Shin-Ichi Urayama , Tsukasa Ueno , Gaku Fujimoto , Dinh Ha Duy Thuy , Hidenao Fukuyama , Keita Ueda

Overlapping but Asymmetrical Relationships Between Schizophrenia and Autism Revealed by Brain Connectivity.

Schizophrenia bulletin

Avec: Yujiro Yoshihara , Giuseppe Lisi , Noriaki Yahata , Junya Fujino , Yukiko Matsumoto , Jun Miyata , Gen-Ichi Sugihara , Shin-Ichi Urayama , Manabu Kubota , Masahiro Yamashita , Ryuichiro Hashimoto , Naho Ichikawa , Weipke Cahn , Neeltje E M van Haren , Susumu Mori , Yasumasa Okamoto , Kiyoto Kasai , Nobumasa Kato , Hiroshi Imamizu , René S Kahn , Akira Sawa , Mitsuo Kawato , Toshiya Murai , Jun Morimoto , Hidehiko Takahashi

Eosinophilic cholangitis: A case report of diagnostically challenging eosinophilic infiltrative biliary obstruction.

World journal of gastrointestinal endoscopy

Avec: Amar Dodda , Karen Matsukuma , Shiro Urayama

Oral Administration of Meloxicam Suppresses Low-Dose Endotoxin Challenge-Induced Pain in Thoroughbred Horses.

Journal of equine veterinary science

Avec: Shuntaro Urayama , Akane Tanaka , Kanichi Kusano , Hiroaki Sato , Tsuyoshi Nagashima , Ippei Fukuda , Chihiro Fujisawa , Hiroshi Matsuda

Optimal Model Mapping for Intravoxel Incoherent Motion MRI.

Frontiers in human neuroscience

Avec: Yen-Peng Liao , Shin-Ichi Urayama , Tadashi Isa , Hidenao Fukuyama

Congenital anomalies causing hemato/hydrocolpos: imaging findings, treatments, and outcomes.

Japanese journal of radiology

Avec: Keizo Tanitame , Nobuko Tanitame , Saiko Urayama , Kazuhiro Ohtsu

Phenotypic and Molecular Biological Analysis of Polymycovirus AfuPmV-1M From

Frontiers in microbiology

Avec: Azusa Takahashi-Nakaguchi , Erika Shishido , Misa Yahara , Syun-Ichi Urayama , Akihiro Ninomiya , Yuto Chiba , Kanae Sakai , Daisuke Hagiwara , Hiroji Chibana , Hiromitsu Moriyama , Tohru Gonoi

Insertable inductively coupled volumetric coils for MR microscopy in a human 7T MR system.

Magnetic resonance in medicine

Avec: Tomohisa Okada , Shinya Handa , Bill Ding , Shin-Ichi Urayama , Koji Fujimoto , Atsushi Shima , Daisuke Yoshii , Takashi Ayaki , Nobukatsu Sawamoto , Ryosuke Takahashi , Hirotaka Onoe , Tadashi Isa , Labros Petropoulos

DsRNA Sequencing for RNA Virus Surveillance Using Human Clinical Samples.

Viruses

Avec: Takuma Izumi , Yuhei Morioka , Syun-Ichi Urayama , Daisuke Motooka , Tomokazu Tamura , Takahiro Kawagishi , Yuta Kanai , Takeshi Kobayashi , Chikako Ono , Akinari Morinaga , Takahiro Tomiyama , Norifumi Iseda , Yukiko Kosai , Shoichi Inokuchi , Shota Nakamura , Tomohisa Tanaka , Kohji Moriishi , Hiroaki Kariwa , Tomoharu Yoshizumi , Masaki Mori , Yoshiharu Matsuura , Takasuke Fukuhara

Discovery, Genomic Sequence Characterization and Phylogenetic Analysis of Novel RNA Viruses in the Turfgrass Pathogenic

Viruses

Avec: Islam Hamim , Syun-Ichi Urayama , Osamu Netsu , Akemi Tanaka , Tsutomu Arie , Hiromitsu Moriyama , Ken Komatsu

NeoRdRp: A Comprehensive Dataset for Identifying RNA-dependent RNA Polymerases of Various RNA Viruses from Metatranscriptomic Data.

Microbes and environments

Avec: Shoichi Sakaguchi , Syun-Ichi Urayama , Yoshihiro Takaki , Kensuke Hirosuna , Hong Wu , Youichi Suzuki , Takuro Nunoura , Takashi Nakano , So Nakagawa

Identification of novel RNA mycoviruses from wild mushroom isolates in Japan.

Virus research

Avec: Yan-Jie Zhao , Takashi Shirouzu , Yuto Chiba , Kentaro Hosaka , Hiromitsu Moriyama , Syun-Ichi Urayama , Daisuke Hagiwara

Réseau de co-auteurs

Syun-Ichi Urayama 21 collaborations

Daisuke Hagiwara 14 collaborations

Yuto Chiba 10 collaborations

Yoshihiro Takaki 5 collaborations

Takuro Nunoura 5 collaborations

Hiromitsu Moriyama 5 collaborations

Sayoko Oiki 4 collaborations

Akihiro Ninomiya 4 collaborations

Shin-Ichi Urayama 4 collaborations

Miho Hirai 3 collaborations

Takashi Yaguchi 3 collaborations

Yan-Jie Zhao 3 collaborations

Misa Kuroki 3 collaborations

Hidenao Fukuyama 3 collaborations

Toshiya Murai 3 collaborations

Michiko Takahashi 2 collaborations

Yuichi Masuda 2 collaborations

Keizo Nagasaki 2 collaborations

Yanjie Zhao 2 collaborations

Shin-Ichi Fuji 2 collaborations

Tsutomu Arie 2 collaborations

Ken Komatsu 2 collaborations

Toshihiko Aso 2 collaborations

Yuji Tomaru 2 collaborations

Kei Kimura 2 collaborations

Hiroki Takahashi 2 collaborations

Yoko Kusuya 2 collaborations

Shuntaro Urayama 2 collaborations

Kanichi Kusano 2 collaborations

Hiroaki Sato 2 collaborations

Hiroshi Matsuda 2 collaborations

Akane Tanaka 2 collaborations

Tadashi Isa 2 collaborations

Armen Eskandari 1 collaboration

Patrick Koo 1 collaboration

Heejung Bang 1 collaboration

Dorina Gui 1 collaboration

Tamaki Uehara-Ichiki 1 collaboration

Masashi Fujinaga 1 collaboration

Kaoru Hanada 1 collaboration

Kei Wada 1 collaboration

Tsuyoshi Hosoya 1 collaboration

Syunichi Urayama 1 collaboration

Ayano Ikeda 1 collaboration

Tomoya Higashiura 1 collaboration

Yu Katoh 1 collaboration

Osamu Hayashi 1 collaboration

Mitsuhiro Aihara 1 collaboration

Toshiyuki Fukuhara 1 collaboration

Takashi Kobayashi 1 collaboration

Shu Hase 1 collaboration

Tohru Teraoka 1 collaboration

Shinnichi Urayama 1 collaboration

Hiromori Shimabukuro 1 collaboration

Yukino Mizutani 1 collaboration

Ryo Muko 1 collaboration

Tomoya Sunouchi 1 collaboration

Yuko Toishi 1 collaboration

Masanori Muranaka 1 collaboration

Taekyun Shin 1 collaboration

Masa-Aki Oikawa 1 collaboration

Yoshinobu Ojima 1 collaboration

Mohammad Ali 1 collaboration

Yoshihiro Nomura 1 collaboration

Ted W Toal 1 collaboration

Ana P Estrada-Florez 1 collaboration

Guadalupe M Polanco-Echeverry 1 collaboration

Ruta M Sahasrabudhe 1 collaboration

Paul C Lott 1 collaboration

John J Suarez-Olaya 1 collaboration

Alix A Guevara-Tique 1 collaboration

Sienna Rocha 1 collaboration

Alexa Morales-Arana 1 collaboration

Fabian Castro-Valencia 1 collaboration

Amanda Kirane 1 collaboration

Dongguang Wei 1 collaboration

Nora Rios-Sarabia 1 collaboration

Rafael Medrano 1 collaboration

Alejandra Mantilla 1 collaboration

Magdalena Echeverry de Polanco 1 collaboration

Javier Torres 1 collaboration

Mabel E Bohorquez-Lozano 1 collaboration

Luis G Carvajal-Carmona 1 collaboration

Yuriko Nagano 1 collaboration

Akihito Fukudome 1 collaboration

Tomoyo Okumura 1 collaboration

Yosuke Nishimura 1 collaboration

Norio Kurosawa 1 collaboration

Eugene V Koonin 1 collaboration

Mart Krupovic 1 collaboration

Maiko Umemura 1 collaboration

Masaaki Shimizu 1 collaboration

Akira Watanabe 1 collaboration

Katsuhiko Kamei 1 collaboration

N Tamura 1 collaboration

E Yoshihara 1 collaboration

K Seki 1 collaboration

N Mae 1 collaboration

K Kodaira 1 collaboration

M Iimori 1 collaboration

Y Yamazaki 1 collaboration

H Mita 1 collaboration

S Urayama 1 collaboration

T Kuroda 1 collaboration

M Ohta 1 collaboration

Y Kasashima 1 collaboration

Rei Suo 1 collaboration

Shiro Itoi 1 collaboration

Genichi Sugihara 1 collaboration

Shiho Ubukata 1 collaboration

Tsukasa Ueno 1 collaboration

Gaku Fujimoto 1 collaboration

Dinh Ha Duy Thuy 1 collaboration

Keita Ueda 1 collaboration

Yujiro Yoshihara 1 collaboration

Giuseppe Lisi 1 collaboration

Noriaki Yahata 1 collaboration

Junya Fujino 1 collaboration

Yukiko Matsumoto 1 collaboration

Jun Miyata 1 collaboration

Gen-Ichi Sugihara 1 collaboration

Manabu Kubota 1 collaboration

Masahiro Yamashita 1 collaboration

Ryuichiro Hashimoto 1 collaboration

Naho Ichikawa 1 collaboration

Weipke Cahn 1 collaboration

Neeltje E M van Haren 1 collaboration

Susumu Mori 1 collaboration

Yasumasa Okamoto 1 collaboration

Kiyoto Kasai 1 collaboration

Nobumasa Kato 1 collaboration

Hiroshi Imamizu 1 collaboration

René S Kahn 1 collaboration

Akira Sawa 1 collaboration

Mitsuo Kawato 1 collaboration

Jun Morimoto 1 collaboration

Hidehiko Takahashi 1 collaboration

Amar Dodda 1 collaboration

Karen Matsukuma 1 collaboration

Tsuyoshi Nagashima 1 collaboration

Ippei Fukuda 1 collaboration

Chihiro Fujisawa 1 collaboration

Yen-Peng Liao 1 collaboration

Keizo Tanitame 1 collaboration

Nobuko Tanitame 1 collaboration

Saiko Urayama 1 collaboration

Kazuhiro Ohtsu 1 collaboration

Azusa Takahashi-Nakaguchi 1 collaboration

Erika Shishido 1 collaboration

Misa Yahara 1 collaboration

Kanae Sakai 1 collaboration

Hiroji Chibana 1 collaboration

Tohru Gonoi 1 collaboration

Tomohisa Okada 1 collaboration

Shinya Handa 1 collaboration

Bill Ding 1 collaboration

Koji Fujimoto 1 collaboration

Atsushi Shima 1 collaboration

Daisuke Yoshii 1 collaboration

Takashi Ayaki 1 collaboration

Nobukatsu Sawamoto 1 collaboration

Ryosuke Takahashi 1 collaboration

Hirotaka Onoe 1 collaboration

Labros Petropoulos 1 collaboration

Takuma Izumi 1 collaboration

Yuhei Morioka 1 collaboration

Daisuke Motooka 1 collaboration

Tomokazu Tamura 1 collaboration

Takahiro Kawagishi 1 collaboration

Yuta Kanai 1 collaboration

Takeshi Kobayashi 1 collaboration

Chikako Ono 1 collaboration

Akinari Morinaga 1 collaboration

Takahiro Tomiyama 1 collaboration

Norifumi Iseda 1 collaboration

Yukiko Kosai 1 collaboration

Shoichi Inokuchi 1 collaboration

Shota Nakamura 1 collaboration

Tomohisa Tanaka 1 collaboration

Kohji Moriishi 1 collaboration

Hiroaki Kariwa 1 collaboration

Tomoharu Yoshizumi 1 collaboration

Masaki Mori 1 collaboration

Yoshiharu Matsuura 1 collaboration

Takasuke Fukuhara 1 collaboration

Islam Hamim 1 collaboration

Osamu Netsu 1 collaboration

Akemi Tanaka 1 collaboration

Shoichi Sakaguchi 1 collaboration

Kensuke Hirosuna 1 collaboration

Hong Wu 1 collaboration

Youichi Suzuki 1 collaboration

Takashi Nakano 1 collaboration

So Nakagawa 1 collaboration

Takashi Shirouzu 1 collaboration

Kentaro Hosaka 1 collaboration