Stepan Timr

Affiliations

Department of Computational Chemistry, J. Heyrovsky Institute of Physical Chemistry, Czech Academy of Sciences, Prague, Czech Republic.

ORCID: http://orcid.org/0000-0002-5824-4476

Publications (13)

Structural basis for allosteric regulation of human phosphofructokinase-1.

Nature communications

Avec: Eric M Lynch , Heather Hansen , Lauren Salay , Madison Cooper , Stepan Timr , Justin M Kollman , Bradley A Webb

Optimized OPEP Force Field for Simulation of Crowded Protein Solutions.

The journal of physical chemistry. B

Avec: Stepan Timr , Simone Melchionna , Philippe Derreumaux , Fabio Sterpone

Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis.

Chemical reviews

Avec: Phuong H Nguyen , Ayyalusamy Ramamoorthy , Bikash R Sahoo , Jie Zheng , Peter Faller , John E Straub , Laura Dominguez , Joan-Emma Shea , Nikolay V Dokholyan , Alfonso De Simone , Buyong Ma , Ruth Nussinov , Saeed Najafi , Son Tung Ngo , Antoine Loquet , Mara Chiricotto , Pritam Ganguly , James McCarty , Mai Suan Li , Carol Hall , Yiming Wang , Yifat Miller , Simone Melchionna , Birgit Habenstein , Stepan Timr , Jiaxing Chen , Brianna Hnath , Birgit Strodel , Rakez Kayed , Sylvain Lesné , Guanghong Wei , Fabio Sterpone , Andrew J Doig , Philippe Derreumaux

Protein thermal stability.

Progress in molecular biology and translational science

Avec: Stepan Timr , Dominique Madern , Fabio Sterpone

Decoding the Role of the Global Proteome Dynamics for Cellular Thermal Stability.

The journal of physical chemistry letters

Avec: Beatrice Caviglia , Daniele Di Bari , Stepan Timr , Marianne Guiral , Marie-Thérèse Giudici-Orticoni , Caterina Petrillo , Judith Peters , Fabio Sterpone , Alessandro Paciaroni

Modelling lipid systems in fluid with Lattice Boltzmann Molecular Dynamics simulations and hydrodynamics.

Scientific reports

Avec: Astrid F Brandner , Stepan Timr , Simone Melchionna , Philippe Derreumaux , Marc Baaden , Fabio Sterpone

Stability Effect of Quinary Interactions Reversed by Single Point Mutations.

Journal of the American Chemical Society

Avec: David Gnutt , Stepan Timr , Jonas Ahlers , Benedikt König , Emily Manderfeld , Matthias Heyden , Fabio Sterpone , Simon Ebbinghaus

The Unfolding Journey of Superoxide Dismutase 1 Barrels under Crowding: Atomistic Simulations Shed Light on Intermediate States and Their Interactions with Crowders.

The journal of physical chemistry letters

Avec: Stepan Timr , David Gnutt , Simon Ebbinghaus , Fabio Sterpone

Computational Insights into the Unfolding of a Destabilized Superoxide Dismutase 1 Mutant.

Biology

Avec: Stepan Timr , Fabio Sterpone

Sequestration of Proteins in Stress Granules Relies on the In-Cell but Not the

Journal of the American Chemical Society

Avec: Nirnay Samanta , Sara S Ribeiro , Mailin Becker , Emeline Laborie , Roland Pollak , Stepan Timr , Fabio Sterpone , Simon Ebbinghaus

Stabilizing or Destabilizing: Simulations of Chymotrypsin Inhibitor 2 under Crowding Reveal Existence of a Crossover Temperature.

The journal of physical chemistry letters

Avec: Stepan Timr , Fabio Sterpone

Diffusive Dynamics of Bacterial Proteome as a Proxy of Cell Death.

ACS central science

Avec: Daniele Di Bari , Stepan Timr , Marianne Guiral , Marie-Thérèse Giudici-Orticoni , Tilo Seydel , Christian Beck , Caterina Petrillo , Philippe Derreumaux , Simone Melchionna , Fabio Sterpone , Judith Peters , Alessandro Paciaroni

Structural basis for allosteric regulation of human phosphofructokinase-1.

bioRxiv : the preprint server for biology

Avec: Eric M Lynch , Heather Hansen , Lauren Salay , Madison Cooper , Stepan Timr , Justin M Kollman , Bradley A Webb

Réseau de co-auteurs

Fabio Sterpone 11 collaborations

Simone Melchionna 4 collaborations

Philippe Derreumaux 4 collaborations

Simon Ebbinghaus 3 collaborations

Eric M Lynch 2 collaborations

Heather Hansen 2 collaborations

Lauren Salay 2 collaborations

Madison Cooper 2 collaborations

Justin M Kollman 2 collaborations

Bradley A Webb 2 collaborations

Daniele Di Bari 2 collaborations

Marianne Guiral 2 collaborations

Marie-Thérèse Giudici-Orticoni 2 collaborations

Caterina Petrillo 2 collaborations

Judith Peters 2 collaborations

Alessandro Paciaroni 2 collaborations

David Gnutt 2 collaborations

Phuong H Nguyen 1 collaboration

Ayyalusamy Ramamoorthy 1 collaboration

Bikash R Sahoo 1 collaboration

Jie Zheng 1 collaboration

Peter Faller 1 collaboration

John E Straub 1 collaboration

Laura Dominguez 1 collaboration

Joan-Emma Shea 1 collaboration

Nikolay V Dokholyan 1 collaboration

Alfonso De Simone 1 collaboration

Buyong Ma 1 collaboration

Ruth Nussinov 1 collaboration

Saeed Najafi 1 collaboration

Son Tung Ngo 1 collaboration

Antoine Loquet 1 collaboration

Mara Chiricotto 1 collaboration

Pritam Ganguly 1 collaboration

James McCarty 1 collaboration

Mai Suan Li 1 collaboration

Carol Hall 1 collaboration

Yiming Wang 1 collaboration

Yifat Miller 1 collaboration

Birgit Habenstein 1 collaboration

Jiaxing Chen 1 collaboration

Brianna Hnath 1 collaboration

Birgit Strodel 1 collaboration

Rakez Kayed 1 collaboration

Sylvain Lesné 1 collaboration

Guanghong Wei 1 collaboration

Andrew J Doig 1 collaboration

Dominique Madern 1 collaboration

Beatrice Caviglia 1 collaboration

Astrid F Brandner 1 collaboration

Marc Baaden 1 collaboration

Jonas Ahlers 1 collaboration

Benedikt König 1 collaboration

Emily Manderfeld 1 collaboration

Matthias Heyden 1 collaboration

Nirnay Samanta 1 collaboration

Sara S Ribeiro 1 collaboration

Mailin Becker 1 collaboration

Emeline Laborie 1 collaboration

Roland Pollak 1 collaboration

Tilo Seydel 1 collaboration

Christian Beck 1 collaboration