Thomas Naert

Publications (13)

The Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for large cleared samples.

bioRxiv : the preprint server for biology

Avec: Nikita Vladimirov , Fabian F Voigt , Thomas Naert , Gabriela R Araujo , Ruiyao Cai , Anna Maria Reuss , Shan Zhao , Patricia Schmid , Sven Hildebrand , Martina Schaettin , Dominik Groos , José María Mateos , Philipp Bethge , Taiyo Yamamoto , Valentino Aerne , Alard Roebroeck , Ali Ertürk , Adriano Aguzzi , Urs Ziegler , Esther Stoeckli , Laura Baudis , Soeren S Lienkamp , Fritjof Helmchen

HNF1B Alters an Evolutionarily Conserved Nephrogenic Program of Target Genes.

Journal of the American Society of Nephrology : JASN

Avec: Kelli Grand , Martine Stoltz , Ludovica Rizzo , Ruth Röck , Michael M Kaminski , Gabriela Salinas , Maike Getwan , Thomas Naert , Roman Pichler , Soeren S Lienkamp

Maximizing CRISPR/Cas9 phenotype penetrance applying predictive modeling of editing outcomes in Xenopus and zebrafish embryos.

Scientific reports

Avec: Thomas Naert , Dieter Tulkens , Nicole A Edwards , Marjolein Carron , Nikko-Ideen Shaidani , Marcin Wlizla , Annekatrien Boel , Suzan Demuynck , Marko E Horb , Paul Coucke , Andy Willaert , Aaron M Zorn , Kris Vleminckx

Deletion upstream of MAB21L2 highlights the importance of evolutionarily conserved non-coding sequences for eye development.

Nature communications

Avec: Fabiola Ceroni , Munevver B Cicekdal , Richard Holt , Elena Sorokina , Nicolas Chassaing , Samuel Clokie , Thomas Naert , Lidiya V Talbot , Sanaa Muheisen , Dorine A Bax , Yesim Kesim , Emma C Kivuva , Catherine Vincent-Delorme , Soeren S Lienkamp , Julie Plaisancié , Elfride De Baere , Patrick Calvas , Kris Vleminckx , Elena V Semina , Nicola K Ragge

Homozygous Null TBX4 Mutations Lead to Posterior Amelia with Pelvic and Pulmonary Hypoplasia.

American journal of human genetics

Avec: Ariana Kariminejad , Emmanuelle Szenker-Ravi , Caroline Lekszas , Homa Tajsharghi , Ali-Reza Moslemi , Thomas Naert , Hong Thi Tran , Fatemeh Ahangari , Minoo Rajaei , Mojila Nasseri , Thomas Haaf , Afrooz Azad , Andrea Superti-Furga , Reza Maroofian , Siavash Ghaderi-Sohi , Hossein Najmabadi , Mohammad Reza Abbaszadegan , Kris Vleminckx , Pooneh Nikuei , Bruno Reversade

RBL1 (p107) functions as tumor suppressor in glioblastoma and small-cell pancreatic neuroendocrine carcinoma in Xenopus tropicalis.

Oncogene

Avec: Thomas Naert , Dionysia Dimitrakopoulou , Dieter Tulkens , Suzan Demuynck , Marjolein Carron , Rivka Noelanders , Liza Eeckhout , Gert Van Isterdael , Dieter Deforce , Christian Vanhove , Jo Van Dorpe , David Creytens , Kris Vleminckx

CRISPR-SID: Identifying EZH2 as a druggable target for desmoid tumors via in vivo dependency mapping.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Thomas Naert , Dieter Tulkens , Tom Van Nieuwenhuysen , Joanna Przybyl , Suzan Demuynck , Matt van de Rijn , Mushriq Al-Jazrawe , Benjamin A Alman , Paul J Coucke , Kim De Leeneer , Christian Vanhove , Savvas N Savvides , David Creytens , Kris Vleminckx

Reflective multi-immersion microscope objectives inspired by the Schmidt telescope.

Nature biotechnology

Avec: Fabian F Voigt , Anna Maria Reuss , Thomas Naert , Sven Hildebrand , Martina Schaettin , Adriana L Hotz , Lachlan Whitehead , Armin Bahl , Stephan C F Neuhauss , Alard Roebroeck , Esther T Stoeckli , Soeren S Lienkamp , Adriano Aguzzi , Fritjof Helmchen

Deep learning is widely applicable to phenotyping embryonic development and disease.

Development (Cambridge, England)

Avec: Thomas Naert , Özgün Çiçek , Paulina Ogar , Max Bürgi , Nikko-Ideen Shaidani , Michael M Kaminski , Yuxiao Xu , Kelli Grand , Marko Vujanovic , Daniel Prata , Friedhelm Hildebrandt , Thomas Brox , Olaf Ronneberger , Fabian F Voigt , Fritjof Helmchen , Johannes Loffing , Marko E Horb , Helen Rankin Willsey , Soeren S Lienkamp

Genetic Variants in ARHGEF6 Cause Congenital Anomalies of the Kidneys and Urinary Tract in Humans, Mice, and Frogs.

Journal of the American Society of Nephrology : JASN

Avec: Verena Klämbt , Florian Buerger , Chunyan Wang , Thomas Naert , Karin Richter , Theresa Nauth , Anna-Carina Weiss , Tobias Sieckmann , Ethan Lai , Dervla M Connaughton , Steve Seltzsam , Nina Mann , Amar J Majmundar , Chen-Han W Wu , Ana C Onuchic-Whitford , Shirlee Shril , Sophia Schneider , Luca Schierbaum , Rufeng Dai , Mir Reza Bekheirnia , Marieke Joosten , Omer Shlomovitz , Asaf Vivante , Ehud Banne , Shrikant Mane , Richard P Lifton , Karin M Kirschner , Andreas Kispert , Georg Rosenberger , Klaus-Dieter Fischer , Soeren S Lienkamp , Mirjam M P Zegers , Friedhelm Hildebrandt

Mutations in the histone methyltransferase Ezh2 drive context-dependent leukemia in Xenopus tropicalis.

Leukemia

Avec: Dieter Tulkens , Marthe Boelens , Thomas Naert , Marjolein Carron , Suzan Demuynck , Sylviane Dewaele , Gert Van Isterdael , David Creytens , Tim Pieters , Steven Goossens , Pieter Van Vlierberghe , Kris Vleminckx

Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for cleared samples.

Nature communications

Pythia: Non-random DNA repair allows predictable CRISPR/Cas9 integration and gene editing.

bioRxiv : the preprint server for biology

Avec: Thomas Naert , Taiyo Yamamoto , Shuting Han , Melanie Horn , Phillip Bethge , Nikita Vladimirov , Fabian F Voigt , Joana Figueiro-Silva , Ruxandra Bachmann-Gagescu , Fritjof Helmchen , Soeren S Lienkamp

Réseau de co-auteurs

Soeren S Lienkamp 8 collaborations

Kris Vleminckx 6 collaborations

Fabian F Voigt 5 collaborations

Fritjof Helmchen 5 collaborations

Dieter Tulkens 4 collaborations

Suzan Demuynck 4 collaborations

Nikita Vladimirov 3 collaborations

Anna Maria Reuss 3 collaborations

Sven Hildebrand 3 collaborations

Martina Schaettin 3 collaborations

Taiyo Yamamoto 3 collaborations

Alard Roebroeck 3 collaborations

Adriano Aguzzi 3 collaborations

Marjolein Carron 3 collaborations

David Creytens 3 collaborations

Gabriela R Araujo 2 collaborations

Ruiyao Cai 2 collaborations

Shan Zhao 2 collaborations

Patricia Schmid 2 collaborations

Dominik Groos 2 collaborations

José María Mateos 2 collaborations

Philipp Bethge 2 collaborations

Valentino Aerne 2 collaborations

Ali Ertürk 2 collaborations

Urs Ziegler 2 collaborations

Esther Stoeckli 2 collaborations

Laura Baudis 2 collaborations

Kelli Grand 2 collaborations

Michael M Kaminski 2 collaborations

Nikko-Ideen Shaidani 2 collaborations

Marko E Horb 2 collaborations

Gert Van Isterdael 2 collaborations

Christian Vanhove 2 collaborations

Friedhelm Hildebrandt 2 collaborations

Martine Stoltz 1 collaboration

Ludovica Rizzo 1 collaboration

Ruth Röck 1 collaboration

Gabriela Salinas 1 collaboration

Maike Getwan 1 collaboration

Roman Pichler 1 collaboration

Nicole A Edwards 1 collaboration

Marcin Wlizla 1 collaboration

Annekatrien Boel 1 collaboration

Paul Coucke 1 collaboration

Andy Willaert 1 collaboration

Aaron M Zorn 1 collaboration

Fabiola Ceroni 1 collaboration

Munevver B Cicekdal 1 collaboration

Richard Holt 1 collaboration

Elena Sorokina 1 collaboration

Nicolas Chassaing 1 collaboration

Samuel Clokie 1 collaboration

Lidiya V Talbot 1 collaboration

Sanaa Muheisen 1 collaboration

Dorine A Bax 1 collaboration

Yesim Kesim 1 collaboration

Emma C Kivuva 1 collaboration

Catherine Vincent-Delorme 1 collaboration

Julie Plaisancié 1 collaboration

Elfride De Baere 1 collaboration

Patrick Calvas 1 collaboration

Elena V Semina 1 collaboration

Nicola K Ragge 1 collaboration

Ariana Kariminejad 1 collaboration

Emmanuelle Szenker-Ravi 1 collaboration

Caroline Lekszas 1 collaboration

Homa Tajsharghi 1 collaboration

Ali-Reza Moslemi 1 collaboration

Hong Thi Tran 1 collaboration

Fatemeh Ahangari 1 collaboration

Minoo Rajaei 1 collaboration

Mojila Nasseri 1 collaboration

Thomas Haaf 1 collaboration

Afrooz Azad 1 collaboration

Andrea Superti-Furga 1 collaboration

Reza Maroofian 1 collaboration

Siavash Ghaderi-Sohi 1 collaboration

Hossein Najmabadi 1 collaboration

Mohammad Reza Abbaszadegan 1 collaboration

Pooneh Nikuei 1 collaboration

Bruno Reversade 1 collaboration

Dionysia Dimitrakopoulou 1 collaboration

Rivka Noelanders 1 collaboration

Liza Eeckhout 1 collaboration

Dieter Deforce 1 collaboration

Jo Van Dorpe 1 collaboration

Tom Van Nieuwenhuysen 1 collaboration

Joanna Przybyl 1 collaboration

Matt van de Rijn 1 collaboration

Mushriq Al-Jazrawe 1 collaboration

Benjamin A Alman 1 collaboration

Paul J Coucke 1 collaboration

Kim De Leeneer 1 collaboration

Savvas N Savvides 1 collaboration

Adriana L Hotz 1 collaboration

Lachlan Whitehead 1 collaboration

Armin Bahl 1 collaboration

Stephan C F Neuhauss 1 collaboration

Esther T Stoeckli 1 collaboration

Özgün Çiçek 1 collaboration

Paulina Ogar 1 collaboration

Max Bürgi 1 collaboration

Yuxiao Xu 1 collaboration

Marko Vujanovic 1 collaboration

Daniel Prata 1 collaboration

Thomas Brox 1 collaboration

Olaf Ronneberger 1 collaboration

Johannes Loffing 1 collaboration

Helen Rankin Willsey 1 collaboration

Verena Klämbt 1 collaboration

Florian Buerger 1 collaboration

Chunyan Wang 1 collaboration

Karin Richter 1 collaboration

Theresa Nauth 1 collaboration

Anna-Carina Weiss 1 collaboration

Tobias Sieckmann 1 collaboration

Ethan Lai 1 collaboration

Dervla M Connaughton 1 collaboration

Steve Seltzsam 1 collaboration

Nina Mann 1 collaboration

Amar J Majmundar 1 collaboration

Chen-Han W Wu 1 collaboration

Ana C Onuchic-Whitford 1 collaboration

Shirlee Shril 1 collaboration

Sophia Schneider 1 collaboration

Luca Schierbaum 1 collaboration

Rufeng Dai 1 collaboration

Mir Reza Bekheirnia 1 collaboration

Marieke Joosten 1 collaboration

Omer Shlomovitz 1 collaboration

Asaf Vivante 1 collaboration

Ehud Banne 1 collaboration

Shrikant Mane 1 collaboration

Richard P Lifton 1 collaboration

Karin M Kirschner 1 collaboration

Andreas Kispert 1 collaboration

Georg Rosenberger 1 collaboration

Klaus-Dieter Fischer 1 collaboration

Mirjam M P Zegers 1 collaboration

Marthe Boelens 1 collaboration

Sylviane Dewaele 1 collaboration

Tim Pieters 1 collaboration

Steven Goossens 1 collaboration

Pieter Van Vlierberghe 1 collaboration

Shuting Han 1 collaboration

Melanie Horn 1 collaboration

Phillip Bethge 1 collaboration

Joana Figueiro-Silva 1 collaboration

Ruxandra Bachmann-Gagescu 1 collaboration