Tyler Funnell

Affiliations

Tri-Institutional PhD Program in Computational Biology and Medicine, Weill Cornell Medicine, New York, NY, USA.
Computational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.

ORCID: http://orcid.org/0000-0003-1612-5644

Publications (6)

Single-cell genomic variation induced by mutational processes in cancer.

Nature

Avec: Tyler Funnell , Ciara H O'Flanagan , Marc J Williams , Andrew McPherson , Steven McKinney , Farhia Kabeer , Hakwoo Lee , Sohrab Salehi , Ignacio Vázquez-García , Hongyu Shi , Emily Leventhal , Tehmina Masud , Peter Eirew , Damian Yap , Allen W Zhang , Jamie L P Lim , Beixi Wang , Jazmine Brimhall , Justina Biele , Jerome Ting , Vinci Au , Michael Van Vliet , Yi Fei Liu , Sean Beatty , Daniel Lai , Jenifer Pham , Diljot Grewal , Douglas Abrams , Eliyahu Havasov , Samantha Leung , Viktoria Bojilova , Richard A Moore , Nicole Rusk , Florian Uhlitz , Nicholas Ceglia , Adam C Weiner , Elena Zaikova , J Maxwell Douglas , Dmitriy Zamarin , Britta Weigelt , Sarah H Kim , Arnaud Da Cruz Paula , Jorge S Reis-Filho , Spencer D Martin , Yangguang Li , Hong Xu , Teresa Ruiz de Algara , So Ra Lee , Viviana Cerda Llanos , David G Huntsman , Jessica N McAlpine , Auteur inconnu , Sohrab P Shah , Samuel Aparicio

Ovarian cancer mutational processes drive site-specific immune evasion.

Nature

Avec: Ignacio Vázquez-García , Florian Uhlitz , Nicholas Ceglia , Jamie L P Lim , Michelle Wu , Neeman Mohibullah , Juliana Niyazov , Arvin Eric B Ruiz , Kevin M Boehm , Viktoria Bojilova , Christopher J Fong , Tyler Funnell , Diljot Grewal , Eliyahu Havasov , Samantha Leung , Arfath Pasha , Druv M Patel , Maryam Pourmaleki , Nicole Rusk , Hongyu Shi , Rami Vanguri , Marc J Williams , Allen W Zhang , Vance Broach , Dennis S Chi , Arnaud Da Cruz Paula , Ginger J Gardner , Sarah H Kim , Matthew Lennon , Kara Long Roche , Yukio Sonoda , Oliver Zivanovic , Ritika Kundra , Agnes Viale , Fatemeh N Derakhshan , Luke Geneslaw , Shirin Issa Bhaloo , Ana Maroldi , Rahelly Nunez , Fresia Pareja , Anthe Stylianou , Mahsa Vahdatinia , Yonina Bykov , Rachel N Grisham , Ying L Liu , Yulia Lakhman , Ines Nikolovski , Daniel Kelly , Jianjiong Gao , Andrea Schietinger , Travis J Hollmann , Samuel F Bakhoum , Robert A Soslow , Lora H Ellenson , Nadeem R Abu-Rustum , Carol Aghajanian , Claire F Friedman , Andrew McPherson , Britta Weigelt , Dmitriy Zamarin , Sohrab P Shah

Single-cell mtDNA dynamics in tumors is driven by coregulation of nuclear and mitochondrial genomes.

Nature genetics

Avec: Minsoo Kim , Alexander N Gorelick , Ignacio Vàzquez-García , Marc J Williams , Sohrab Salehi , Hongyu Shi , Adam C Weiner , Nick Ceglia , Tyler Funnell , Tricia Park , Sonia Boscenco , Ciara H O'Flanagan , Hui Jiang , Diljot Grewal , Cerise Tang , Nicole Rusk , Payam A Gammage , Andrew McPherson , Sam Aparicio , Sohrab P Shah , Ed Reznik

Accurate determination of CRISPR-mediated gene fitness in transplantable tumours.

Nature communications

Avec: Peter Eirew , Ciara O'Flanagan , Jerome Ting , Sohrab Salehi , Jazmine Brimhall , Beixi Wang , Justina Biele , Teresa Algara , So Ra Lee , Corey Hoang , Damian Yap , Steven McKinney , Cherie Bates , Esther Kong , Daniel Lai , Sean Beatty , Mirela Andronescu , Elena Zaikova , Tyler Funnell , Nicholas Ceglia , Stephen Chia , Karen Gelmon , Colin Mar , Sohrab Shah , Andrew Roth , Alexandre Bouchard-Côté , Samuel Aparicio

Integrated structural variation and point mutation signatures in cancer genomes using correlated topic models.

PLoS computational biology

Avec: Tyler Funnell , Allen W Zhang , Diljot Grewal , Steven McKinney , Ali Bashashati , Yi Kan Wang , Sohrab P Shah

Pilot Trial of Homebound Hematopoietic Cell Transplantation.

Transplantation and cellular therapy

Avec: Heather J Landau , Evelyn Orlando , Elizabeth S Rodriguez , Allison Applebaum , Hannah-Rose Mitchell , Jonathan U Peled , Niloufer Khan , Tyler Funnell , David Chung , Michael Scordo , Gunjan L Shah , Nicole J LeStrange , Katie A Hambright , Courtney M McElrath , Naomi Cazeau , Sean M Devlin , Miguel-Angel Perales , Sergio A Giralt

Réseau de co-auteurs

Diljot Grewal 4 collaborations

Sohrab P Shah 4 collaborations

Marc J Williams 3 collaborations

Andrew McPherson 3 collaborations

Steven McKinney 3 collaborations

Sohrab Salehi 3 collaborations

Hongyu Shi 3 collaborations

Allen W Zhang 3 collaborations

Nicole Rusk 3 collaborations

Nicholas Ceglia 3 collaborations

Ciara H O'Flanagan 2 collaborations

Ignacio Vázquez-García 2 collaborations

Peter Eirew 2 collaborations

Damian Yap 2 collaborations

Jamie L P Lim 2 collaborations

Beixi Wang 2 collaborations

Jazmine Brimhall 2 collaborations

Justina Biele 2 collaborations

Jerome Ting 2 collaborations

Sean Beatty 2 collaborations

Daniel Lai 2 collaborations

Eliyahu Havasov 2 collaborations

Samantha Leung 2 collaborations

Viktoria Bojilova 2 collaborations

Florian Uhlitz 2 collaborations

Adam C Weiner 2 collaborations

Elena Zaikova 2 collaborations

Dmitriy Zamarin 2 collaborations

Britta Weigelt 2 collaborations

Sarah H Kim 2 collaborations

Arnaud Da Cruz Paula 2 collaborations

So Ra Lee 2 collaborations

Samuel Aparicio 2 collaborations

Farhia Kabeer 1 collaboration

Hakwoo Lee 1 collaboration

Emily Leventhal 1 collaboration

Tehmina Masud 1 collaboration

Vinci Au 1 collaboration

Michael Van Vliet 1 collaboration

Yi Fei Liu 1 collaboration

Jenifer Pham 1 collaboration

Douglas Abrams 1 collaboration

Richard A Moore 1 collaboration

J Maxwell Douglas 1 collaboration

Jorge S Reis-Filho 1 collaboration

Spencer D Martin 1 collaboration

Yangguang Li 1 collaboration

Hong Xu 1 collaboration

Teresa Ruiz de Algara 1 collaboration

Viviana Cerda Llanos 1 collaboration

David G Huntsman 1 collaboration

Jessica N McAlpine 1 collaboration

None None 1 collaboration

Michelle Wu 1 collaboration

Neeman Mohibullah 1 collaboration

Juliana Niyazov 1 collaboration

Arvin Eric B Ruiz 1 collaboration

Kevin M Boehm 1 collaboration

Christopher J Fong 1 collaboration

Arfath Pasha 1 collaboration

Druv M Patel 1 collaboration

Maryam Pourmaleki 1 collaboration

Rami Vanguri 1 collaboration

Vance Broach 1 collaboration

Dennis S Chi 1 collaboration

Ginger J Gardner 1 collaboration

Matthew Lennon 1 collaboration

Kara Long Roche 1 collaboration

Yukio Sonoda 1 collaboration

Oliver Zivanovic 1 collaboration

Ritika Kundra 1 collaboration

Agnes Viale 1 collaboration

Fatemeh N Derakhshan 1 collaboration

Luke Geneslaw 1 collaboration

Shirin Issa Bhaloo 1 collaboration

Ana Maroldi 1 collaboration

Rahelly Nunez 1 collaboration

Fresia Pareja 1 collaboration

Anthe Stylianou 1 collaboration

Mahsa Vahdatinia 1 collaboration

Yonina Bykov 1 collaboration

Rachel N Grisham 1 collaboration

Ying L Liu 1 collaboration

Yulia Lakhman 1 collaboration

Ines Nikolovski 1 collaboration

Daniel Kelly 1 collaboration

Jianjiong Gao 1 collaboration

Andrea Schietinger 1 collaboration

Travis J Hollmann 1 collaboration

Samuel F Bakhoum 1 collaboration

Robert A Soslow 1 collaboration

Lora H Ellenson 1 collaboration

Nadeem R Abu-Rustum 1 collaboration

Carol Aghajanian 1 collaboration

Claire F Friedman 1 collaboration

Minsoo Kim 1 collaboration

Alexander N Gorelick 1 collaboration

Ignacio Vàzquez-García 1 collaboration

Nick Ceglia 1 collaboration

Tricia Park 1 collaboration

Sonia Boscenco 1 collaboration

Hui Jiang 1 collaboration

Cerise Tang 1 collaboration

Payam A Gammage 1 collaboration

Sam Aparicio 1 collaboration

Ed Reznik 1 collaboration

Ciara O'Flanagan 1 collaboration

Teresa Algara 1 collaboration

Corey Hoang 1 collaboration

Cherie Bates 1 collaboration

Esther Kong 1 collaboration

Mirela Andronescu 1 collaboration

Stephen Chia 1 collaboration

Karen Gelmon 1 collaboration

Colin Mar 1 collaboration

Sohrab Shah 1 collaboration

Andrew Roth 1 collaboration

Alexandre Bouchard-Côté 1 collaboration

Ali Bashashati 1 collaboration

Yi Kan Wang 1 collaboration

Heather J Landau 1 collaboration

Evelyn Orlando 1 collaboration

Elizabeth S Rodriguez 1 collaboration

Allison Applebaum 1 collaboration

Hannah-Rose Mitchell 1 collaboration

Jonathan U Peled 1 collaboration

Niloufer Khan 1 collaboration

David Chung 1 collaboration

Michael Scordo 1 collaboration

Gunjan L Shah 1 collaboration

Nicole J LeStrange 1 collaboration

Katie A Hambright 1 collaboration

Courtney M McElrath 1 collaboration

Naomi Cazeau 1 collaboration

Sean M Devlin 1 collaboration

Miguel-Angel Perales 1 collaboration

Sergio A Giralt 1 collaboration