Zied Gaieb

Affiliations

Department of Bioengineering, University of California, Riverside, CA.

Publications (17)

Role of Electrostatic Hotspots in the Selectivity of Complement Control Proteins Toward Human and Bovine Complement Inhibition.

Frontiers in molecular biosciences

Avec: Yogesh B Narkhede , Avneesh K Gautam , Rohaine V Hsu , Wilson Rodriguez , Nehemiah T Zewde , Reed E S Harrison , Pablo R Arantes , Zied Gaieb , Ronald D Gorham , Chris Kieslich , Dimitrios Morikis , Arvind Sahu , Giulia Palermo

Simulations support the interaction of the SARS-CoV-2 spike protein with nicotinic acetylcholine receptors.

bioRxiv : the preprint server for biology

Avec: A Sofia F Oliveira , Amaurys Avila Ibarra , Isabel Bermudez , Lorenzo Casalino , Zied Gaieb , Deborah K Shoemark , Timothy Gallagher , Richard B Sessions , Rommie E Amaro , Adrian J Mulholland

An Analysis of Proteochemometric and Conformal Prediction Machine Learning Protein-Ligand Binding Affinity Models.

Frontiers in molecular biosciences

Avec: Conor Parks , Zied Gaieb , Rommie E Amaro

The flexibility of ACE2 in the context of SARS-CoV-2 infection.

Biophysical journal

Avec: Emilia P Barros , Lorenzo Casalino , Zied Gaieb , Abigail C Dommer , Yuzhang Wang , Lucy Fallon , Lauren Raguette , Kellon Belfon , Carlos Simmerling , Rommie E Amaro

D3R grand challenge 4: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies.

Journal of computer-aided molecular design

Avec: Conor D Parks , Zied Gaieb , Michael Chiu , Huanwang Yang , Chenghua Shao , W Patrick Walters , Johanna M Jansen , Georgia McGaughey , Richard A Lewis , Scott D Bembenek , Michael K Ameriks , Tara Mirzadegan , Stephen K Burley , Rommie E Amaro , Michael K Gilson

Comparison of commonly used solid tumor targeted gene sequencing panels for estimating tumor mutation burden shows analytical and prognostic concordance within the cancer genome atlas cohort.

Journal for immunotherapy of cancer

Avec: Nicholas Bevins , Shulei Sun , Zied Gaieb , John A Thorson , Sarah S Murray

The flexibility of ACE2 in the context of SARS-CoV-2 infection.

bioRxiv : the preprint server for biology

Avec: E P Barros , L Casalino , Z Gaieb , A C Dommer , Y Wang , L Fallon , L Raguette , K Belfon , C Simmerling , R E Amaro

A potential interaction between the SARS-CoV-2 spike protein and nicotinic acetylcholine receptors.

Biophysical journal

Avec: A Sofia F Oliveira , Amaurys Avila Ibarra , Isabel Bermudez , Lorenzo Casalino , Zied Gaieb , Deborah K Shoemark , Timothy Gallagher , Richard B Sessions , Rommie E Amaro , Adrian J Mulholland

Disease-related mutations in PI3Kγ disrupt regulatory C-terminal dynamics and reveal a path to selective inhibitors.

eLife

Avec: Manoj K Rathinaswamy , Zied Gaieb , Kaelin D Fleming , Chiara Borsari , Noah J Harris , Brandon E Moeller , Matthias P Wymann , Rommie E Amaro , John E Burke

AI-Driven Multiscale Simulations Illuminate Mechanisms of SARS-CoV-2 Spike Dynamics.

bioRxiv : the preprint server for biology

Avec: Lorenzo Casalino , Abigail Dommer , Zied Gaieb , Emilia P Barros , Terra Sztain , Surl-Hee Ahn , Anda Trifan , Alexander Brace , Anthony Bogetti , Heng Ma , Hyungro Lee , Matteo Turilli , Syma Khalid , Lillian Chong , Carlos Simmerling , David J Hardy , Julio D C Maia , James C Phillips , Thorsten Kurth , Abraham Stern , Lei Huang , John McCalpin , Mahidhar Tatineni , Tom Gibbs , John E Stone , Shantenu Jha , Arvind Ramanathan , Rommie E Amaro

A Multiscale Coarse-grained Model of the SARS-CoV-2 Virion.

bioRxiv : the preprint server for biology

Avec: Alvin Yu , Alexander J Pak , Peng He , Viviana Monje-Galvan , Lorenzo Casalino , Zied Gaieb , Abigail C Dommer , Rommie E Amaro , Gregory A Voth

AI-driven multiscale simulations illuminate mechanisms of SARS-CoV-2 spike dynamics.

The international journal of high performance computing applications

Avec: Lorenzo Casalino , Abigail C Dommer , Zied Gaieb , Emilia P Barros , Terra Sztain , Surl-Hee Ahn , Anda Trifan , Alexander Brace , Anthony T Bogetti , Austin Clyde , Heng Ma , Hyungro Lee , Matteo Turilli , Syma Khalid , Lillian T Chong , Carlos Simmerling , David J Hardy , Julio Dc Maia , James C Phillips , Thorsten Kurth , Abraham C Stern , Lei Huang , John D McCalpin , Mahidhar Tatineni , Tom Gibbs , John E Stone , Shantenu Jha , Arvind Ramanathan , Rommie E Amaro

Beyond Shielding: The Roles of Glycans in the SARS-CoV-2 Spike Protein.

ACS central science

Avec: Lorenzo Casalino , Zied Gaieb , Jory A Goldsmith , Christy K Hjorth , Abigail C Dommer , Aoife M Harbison , Carl A Fogarty , Emilia P Barros , Bryn C Taylor , Jason S McLellan , Elisa Fadda , Rommie E Amaro

A multiscale coarse-grained model of the SARS-CoV-2 virion.

Biophysical journal

Avec: Alvin Yu , Alexander J Pak , Peng He , Viviana Monje-Galvan , Lorenzo Casalino , Zied Gaieb , Abigail C Dommer , Rommie E Amaro , Gregory A Voth

Development of Dimethylisoxazole-Attached Imidazo[1,2-

Journal of medicinal chemistry

Avec: Alex Muthengi , Virangika K Wimalasena , Hailemichael O Yosief , Melissa J Bikowitz , Logan H Sigua , Tingjian Wang , Deyao Li , Zied Gaieb , Gagan Dhawan , Shuai Liu , Jon Erickson , Rommie E Amaro , Ernst Schönbrunn , Jun Qi , Wei Zhang

D3R Grand Challenge 3: blind prediction of protein-ligand poses and affinity rankings.

Journal of computer-aided molecular design

Avec: Zied Gaieb , Conor D Parks , Michael Chiu , Huanwang Yang , Chenghua Shao , W Patrick Walters , Millard H Lambert , Neysa Nevins , Scott D Bembenek , Michael K Ameriks , Tara Mirzadegan , Stephen K Burley , Rommie E Amaro , Michael K Gilson

Beyond Shielding: The Roles of Glycans in SARS-CoV-2 Spike Protein.

bioRxiv : the preprint server for biology

Réseau de co-auteurs

Rommie E Amaro 14 collaborations

Lorenzo Casalino 9 collaborations

Abigail C Dommer 6 collaborations

Emilia P Barros 5 collaborations

Carlos Simmerling 3 collaborations

A Sofia F Oliveira 2 collaborations

Amaurys Avila Ibarra 2 collaborations

Isabel Bermudez 2 collaborations

Deborah K Shoemark 2 collaborations

Timothy Gallagher 2 collaborations

Richard B Sessions 2 collaborations

Adrian J Mulholland 2 collaborations

Conor D Parks 2 collaborations

Michael Chiu 2 collaborations

Huanwang Yang 2 collaborations

Chenghua Shao 2 collaborations

W Patrick Walters 2 collaborations

Scott D Bembenek 2 collaborations

Michael K Ameriks 2 collaborations

Tara Mirzadegan 2 collaborations

Stephen K Burley 2 collaborations

Michael K Gilson 2 collaborations

Terra Sztain 2 collaborations

Surl-Hee Ahn 2 collaborations

Anda Trifan 2 collaborations

Alexander Brace 2 collaborations

Heng Ma 2 collaborations

Hyungro Lee 2 collaborations

Matteo Turilli 2 collaborations

Syma Khalid 2 collaborations

David J Hardy 2 collaborations

James C Phillips 2 collaborations

Thorsten Kurth 2 collaborations

Lei Huang 2 collaborations

Mahidhar Tatineni 2 collaborations

Tom Gibbs 2 collaborations

John E Stone 2 collaborations

Shantenu Jha 2 collaborations

Arvind Ramanathan 2 collaborations

Alvin Yu 2 collaborations

Alexander J Pak 2 collaborations

Peng He 2 collaborations

Viviana Monje-Galvan 2 collaborations

Gregory A Voth 2 collaborations

Jory A Goldsmith 2 collaborations

Christy K Hjorth 2 collaborations

Aoife M Harbison 2 collaborations

Carl A Fogarty 2 collaborations

Bryn C Taylor 2 collaborations

Jason S McLellan 2 collaborations

Elisa Fadda 2 collaborations

Yogesh B Narkhede 1 collaboration

Avneesh K Gautam 1 collaboration

Rohaine V Hsu 1 collaboration

Wilson Rodriguez 1 collaboration

Nehemiah T Zewde 1 collaboration

Reed E S Harrison 1 collaboration

Pablo R Arantes 1 collaboration

Ronald D Gorham 1 collaboration

Chris Kieslich 1 collaboration

Dimitrios Morikis 1 collaboration

Arvind Sahu 1 collaboration

Giulia Palermo 1 collaboration

Conor Parks 1 collaboration

Yuzhang Wang 1 collaboration

Lucy Fallon 1 collaboration

Lauren Raguette 1 collaboration

Kellon Belfon 1 collaboration

Johanna M Jansen 1 collaboration

Georgia McGaughey 1 collaboration

Richard A Lewis 1 collaboration

Nicholas Bevins 1 collaboration

Shulei Sun 1 collaboration

John A Thorson 1 collaboration

Sarah S Murray 1 collaboration

E P Barros 1 collaboration

L Casalino 1 collaboration

Z Gaieb 1 collaboration

A C Dommer 1 collaboration

Y Wang 1 collaboration

L Fallon 1 collaboration

L Raguette 1 collaboration

K Belfon 1 collaboration

C Simmerling 1 collaboration

R E Amaro 1 collaboration

Manoj K Rathinaswamy 1 collaboration

Kaelin D Fleming 1 collaboration

Chiara Borsari 1 collaboration

Noah J Harris 1 collaboration

Brandon E Moeller 1 collaboration

Matthias P Wymann 1 collaboration

John E Burke 1 collaboration

Abigail Dommer 1 collaboration

Anthony Bogetti 1 collaboration

Lillian Chong 1 collaboration

Julio D C Maia 1 collaboration

Abraham Stern 1 collaboration

John McCalpin 1 collaboration

Anthony T Bogetti 1 collaboration

Austin Clyde 1 collaboration

Lillian T Chong 1 collaboration

Julio Dc Maia 1 collaboration

Abraham C Stern 1 collaboration

John D McCalpin 1 collaboration

Alex Muthengi 1 collaboration

Virangika K Wimalasena 1 collaboration

Hailemichael O Yosief 1 collaboration

Melissa J Bikowitz 1 collaboration

Logan H Sigua 1 collaboration

Tingjian Wang 1 collaboration

Deyao Li 1 collaboration

Gagan Dhawan 1 collaboration

Shuai Liu 1 collaboration

Jon Erickson 1 collaboration

Ernst Schönbrunn 1 collaboration

Jun Qi 1 collaboration

Wei Zhang 1 collaboration

Millard H Lambert 1 collaboration

Neysa Nevins 1 collaboration