The complete mitochondrial genome of Sarcoptes scabiei var. nyctereutis from the Japanese raccoon dog: Prediction and detection of two transfer RNAs (tRNA-A and tRNA-Y).

Animals Genome, Mitochondrial Phylogeny RNA, Transfer, Ala / chemistry RNA, Transfer, Tyr / chemistry Raccoon Dogs / parasitology Sarcoptes scabiei / classification
Mitochondrial genome Raccoon dog Sarcoptes scabiei Transfer RNA

Journal

Genomics
ISSN: 1089-8646
Titre abrégé: Genomics
Pays: United States
ID NLM: 8800135

Informations de publication

Date de publication:
12 2019
Historique:
received: 19 07 2018
revised: 21 08 2018
accepted: 04 09 2018
pubmed: 18 9 2018
medline: 11 4 2020
entrez: 18 9 2018
Statut: ppublish

Résumé

Sarcoptes scabiei (Acari: Sarcoptidae) causes a common contagious skin disease that affects many mammals. Here, the complete mitochondrial genome of a mite, S. scabiei var. nyctereutis, from Japanese wild raccoon dogs was analyzed. The 13,837bp circular genome contained 13 protein-coding genes, two rRNA genes, and 22 tRNA genes. For the first time, two tRNAs (alanine and tyrosine), that were thought to be absent in scabies mites from other animals, were predicted to have short, non-cloverleaf structures by in silico annotation and detected by RT-PCR, sequencing, and northern analysis. The mitochondrial genome structure of S. scabiei is similar to that of Psoroptes cuniculi and Dermatophagoides farinae. While small and unusual tRNA genes seem to be common among acariform mites, further experimental evidence for their presence is needed. Furthermore, through an analysis of the cox1 gene, we have provided new evidence to confirm the transmission of this mite between different animal hosts.

Identifiants

DOI: 10.1016/j.ygeno.2018.09.002 PMID: 30223010
pubmed: 30223010
pii: S0888-7543(18)30414-2
doi: 10.1016/j.ygeno.2018.09.002
pii:
doi:

Substances chimiques

RNA, Transfer, Ala 0
RNA, Transfer, Tyr 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

1183-1191

Informations de copyright

Copyright © 2019 Elsevier Inc. All rights reserved.

Auteurs

Takafumi Ueda (T)

Department of Microbiology and Immunology, Teikyo University School of Medicine, 2-11-1 Kaga, Itabashi-ku, Tokyo 173-8605, Japan.

Hiroshi Tarui (H)

Division of Genomic Technologies, Center for Life Science Technologies, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Yokohama 230-0045, Japan.

Nobuhide Kido (N)

Kanazawa Zoological Gardens, 5-15-1 Kamariyahigashi, Kanazawa-ku, Yokohama, Kanazawa 236-0042, Japan.

Keitaro Imaizumi (K)

Department of Microbiology and Immunology, Teikyo University School of Medicine, 2-11-1 Kaga, Itabashi-ku, Tokyo 173-8605, Japan; Kyokuto Pharmaceutical Industrial Co., Ltd., 7-8 Nihonbashi Kobunacho, Chuo-ku, Tokyo 103-0024, Japan.

Kenji Hikosaka (K)

Department of Microbiology and Immunology, Teikyo University School of Medicine, 2-11-1 Kaga, Itabashi-ku, Tokyo 173-8605, Japan; Department of Infection and Host Defense, Graduate School of Medicine, Chiba University, 1-8-1 Inohana, Chuo-ku, Chiba 260-8670, Japan.

Takashi Abe (T)

Graduate School of Science and Technology, Niigata University, 8050 Ikarashi, 2-no-cho, Nishi-ku, Niigata 950-2181, Japan.

Daisuke Minegishi (D)

Research Institute of Bio-System Informatics, Tohoku Chemical Co., Ltd., 6-15-5, Mitake, Morioka, Iwate 020-0122, Japan.

Yoshifumi Tada (Y)

Research Institute of Bio-System Informatics, Tohoku Chemical Co., Ltd., 6-15-5, Mitake, Morioka, Iwate 020-0122, Japan.

Masataka Nakagawa (M)

Kyokuto Pharmaceutical Industrial Co., Ltd., 7-8 Nihonbashi Kobunacho, Chuo-ku, Tokyo 103-0024, Japan.

Sohei Tanaka (S)

Kanazawa Zoological Gardens, 5-15-1 Kamariyahigashi, Kanazawa-ku, Yokohama, Kanazawa 236-0042, Japan.

Tomoko Omiya (T)

Kanazawa Zoological Gardens, 5-15-1 Kamariyahigashi, Kanazawa-ku, Yokohama, Kanazawa 236-0042, Japan.

Kouki Morikaku (K)

Kanazawa Zoological Gardens, 5-15-1 Kamariyahigashi, Kanazawa-ku, Yokohama, Kanazawa 236-0042, Japan.

Minori Kawahara (M)

Kanazawa Zoological Gardens, 5-15-1 Kamariyahigashi, Kanazawa-ku, Yokohama, Kanazawa 236-0042, Japan.

Takane Kikuchi-Ueda (T)

Department of Microbiology and Immunology, Teikyo University School of Medicine, 2-11-1 Kaga, Itabashi-ku, Tokyo 173-8605, Japan.

Teruo Akuta (T)

Department of Microbiology and Immunology, Teikyo University School of Medicine, 2-11-1 Kaga, Itabashi-ku, Tokyo 173-8605, Japan; Kyokuto Pharmaceutical Industrial Co., Ltd., 7-8 Nihonbashi Kobunacho, Chuo-ku, Tokyo 103-0024, Japan. Electronic address: t.akuta@kyokutoseiyaku.co.jp.

Yasuo Ono (Y)

Department of Microbiology and Immunology, Teikyo University School of Medicine, 2-11-1 Kaga, Itabashi-ku, Tokyo 173-8605, Japan. Electronic address: onoy@med.teikyo-u.ac.jp.

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Classifications MeSH

questionsmedicales.fr › Eucaryotes › Animaux › The complete mitochondrial genome of Sarcoptes...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome mitochondrial › The complete mitochondrial genome of Sarcoptes...
questionsmedicales.fr › Sciences de l'information › Phylogenèse › The complete mitochondrial genome of Sarcoptes...
questionsmedicales.fr › Acides nucléiques, nucléotides et nucléosides › Acides nucléiques › ARN › ARN de transfert › ARN de transfert spécifiques des différents acides aminés › ARN de transfert de l'alanine › The complete mitochondrial genome of Sarcoptes...
questionsmedicales.fr › Acides nucléiques, nucléotides et nucléosides › Acides nucléiques › ARN › ARN de transfert › ARN de transfert spécifiques des différents acides aminés › ARN de transfert de la tyrosine › The complete mitochondrial genome of Sarcoptes...
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Mammifères › Eutheria › Carnivora › Pinnipedia › Canidae › Chiens viverrins › The complete mitochondrial genome of Sarcoptes...
questionsmedicales.fr › Eucaryotes › Animaux › Invertébrés › Arthropodes › Arachnida › Acari › Mites (acariens) › Sarcoptidae › Sarcopte scabiei › The complete mitochondrial genome of Sarcoptes...