A framework for constraining image SNR loss due to MR raw data compression.


Journal

Magma (New York, N.Y.)
ISSN: 1352-8661
Titre abrégé: MAGMA
Pays: Germany
ID NLM: 9310752

Informations de publication

Date de publication:
Apr 2019
Historique:
received: 02 07 2018
accepted: 15 10 2018
revised: 03 10 2018
pubmed: 27 10 2018
medline: 28 7 2019
entrez: 27 10 2018
Statut: ppublish

Résumé

Computationally intensive image reconstruction algorithms can be used online during MRI exams by streaming data to remote high-performance computers. However, data acquisition rates often exceed the bandwidth of the available network resources creating a bottleneck. Data compression is, therefore, desired to ensure fast data transmission. The added noise variance due to compression was determined through statistical analysis for two compression libraries (one custom and one generic) that were implemented in this framework. Limiting the compression error variance relative to the measured thermal noise allowed for image signal-to-noise ratio loss to be explicitly constrained. Achievable compression ratios are dependent on image SNR, user-defined SNR loss tolerance, and acquisition type. However, a 1% reduction in SNR yields approximately four to ninefold compression ratios across MRI acquisition strategies. For free-breathing cine data reconstructed in the cloud, the streaming bandwidth was reduced from 37 to 6.1 MB/s, alleviating the network transmission bottleneck. Our framework enabled data compression for online reconstructions and allowed SNR loss to be constrained based on a user-defined SNR tolerance. This practical tool will enable real-time data streaming and greater than fourfold faster cloud upload times.

Identifiants

pubmed: 30361947
doi: 10.1007/s10334-018-0709-5
pii: 10.1007/s10334-018-0709-5
pmc: PMC8351621
mid: NIHMS1719645
doi:

Types de publication

Journal Article

Langues

eng

Pagination

213-225

Subventions

Organisme : Intramural NIH HHS
ID : Z99 HL999999
Pays : United States

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Auteurs

Matthew C Restivo (MC)

Division of Intramural Research, National Heart, Lung, and Blood Institute, National Institutes of Health, Rm B1D47, 10 Center Dr, Bethesda, MD, 20814, USA. Matthew.restivo@nih.gov.

Adrienne E Campbell-Washburn (AE)

Division of Intramural Research, National Heart, Lung, and Blood Institute, National Institutes of Health, Rm B1D47, 10 Center Dr, Bethesda, MD, 20814, USA.

Peter Kellman (P)

Division of Intramural Research, National Heart, Lung, and Blood Institute, National Institutes of Health, Rm B1D47, 10 Center Dr, Bethesda, MD, 20814, USA.

Hui Xue (H)

Division of Intramural Research, National Heart, Lung, and Blood Institute, National Institutes of Health, Rm B1D47, 10 Center Dr, Bethesda, MD, 20814, USA.

Rajiv Ramasawmy (R)

Division of Intramural Research, National Heart, Lung, and Blood Institute, National Institutes of Health, Rm B1D47, 10 Center Dr, Bethesda, MD, 20814, USA.

Michael S Hansen (MS)

Division of Intramural Research, National Heart, Lung, and Blood Institute, National Institutes of Health, Rm B1D47, 10 Center Dr, Bethesda, MD, 20814, USA.

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