Identification of Small-Molecule Modulators of Diguanylate Cyclase by FRET-Based High-Throughput Screening.


Journal

Chembiochem : a European journal of chemical biology
ISSN: 1439-7633
Titre abrégé: Chembiochem
Pays: Germany
ID NLM: 100937360

Informations de publication

Date de publication:
01 02 2019
Historique:
received: 04 10 2018
pubmed: 6 11 2018
medline: 28 11 2019
entrez: 6 11 2018
Statut: ppublish

Résumé

The bacterial second messenger cyclic diguanosine monophosphate (c-di-GMP) is a key regulator of cellular motility, the cell cycle, and biofilm formation with its resultant antibiotic tolerance, which can make chronic infections difficult to treat. Therefore, diguanylate cyclases, which regulate the spatiotemporal production of c-di-GMP, might be attractive drug targets for control of biofilm formation that is part of chronic infections. We present a FRET-based biochemical high-throughput screening approach coupled with detailed structure-activity studies to identify synthetic small-molecule modulators of the diguanylate cyclase DgcA from Caulobacter crescentus. We identified a set of seven small molecules that regulate DgcA enzymatic activity in the low-micromolar range. Subsequent structure-activity studies on selected scaffolds revealed a remarkable diversity of modulatory behavior, including slight chemical substitutions that reverse the effects from allosteric enzyme inhibition to activation. The compounds identified represent new chemotypes and are potentially developable into chemical genetic tools for the dissection of c-di-GMP signaling networks and alteration of c-di-GMP-associated phenotypes. In sum, our studies underline the importance of detailed mechanism-of-action studies for inhibitors of c-di-GMP signaling and demonstrate the complex interplay between synthetic small molecules and the regulatory mechanisms that control the activity of diguanylate cyclases.

Identifiants

pubmed: 30395379
doi: 10.1002/cbic.201800593
pmc: PMC6509406
mid: NIHMS1019449
doi:

Substances chimiques

Enzyme Inhibitors 0
Escherichia coli Proteins 0
Small Molecule Libraries 0
Phosphorus-Oxygen Lyases EC 4.6.-
diguanylate cyclase EC 4.6.1.-

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

394-407

Subventions

Organisme : NINDS NIH HHS
ID : R21 NS067579
Pays : United States
Organisme : NIAID NIH HHS
ID : U54 AI057141
Pays : United States
Organisme : NIAID NIH HHS
ID : U54 AI057159
Pays : United States

Informations de copyright

© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Références

mBio. 2012 Oct 09;3(5):
pubmed: 23047748
Science. 2010 Jun 4;328(5983):1295-7
pubmed: 20522779
J Am Chem Soc. 2013 Apr 3;135(13):4906-9
pubmed: 23488798
Protein Sci. 2007 Jul;16(7):1429-38
pubmed: 17586775
Nature. 2005 Aug 25;436(7054):1171-5
pubmed: 16121184
J Pharmacol Toxicol Methods. 2000 Jul-Aug;44(1):235-49
pubmed: 11274893
FEMS Microbiol Lett. 2001 Oct 16;204(1):163-7
pubmed: 11682196
Sci Signal. 2015 Jun 09;8(380):ra57
pubmed: 26060330
ACS Chem Biol. 2014 Jan 17;9(1):183-92
pubmed: 24134695
Curr Pharm Des. 2015;21(1):12-24
pubmed: 25189859
J Biol Chem. 2006 Oct 20;281(42):32015-24
pubmed: 16923812
Nat Commun. 2014 Nov 11;5:5392
pubmed: 25386727
RNA Biol. 2015;12(11):1189-97
pubmed: 26114964
Genes Dev. 2004 Mar 15;18(6):715-27
pubmed: 15075296
Mol Microbiol. 2012 Dec;86(6):1424-40
pubmed: 23163901
Antimicrob Agents Chemother. 2012 Oct;56(10):5202-11
pubmed: 22850508
Elife. 2013 Dec 17;2:e01402
pubmed: 24347546
Plant Cell Physiol. 1998 Feb;39(2):144-52
pubmed: 9559560
Biofouling. 2014 Jan;30(1):17-28
pubmed: 24117391
Mol Microbiol. 2006 Nov;62(4):1014-34
pubmed: 17010156
Proc Natl Acad Sci U S A. 2004 Dec 7;101(49):17084-9
pubmed: 15569936
Mol Microbiol. 2014 Nov;94(3):580-94
pubmed: 25171231
Cell Microbiol. 2011 Aug;13(8):1122-9
pubmed: 21707905
Nat Rev Microbiol. 2015 Dec;13(12):749-60
pubmed: 26499894
Mol Microbiol. 2003 Mar;47(6):1695-708
pubmed: 12622822
Bioorg Med Chem. 2010 Sep 15;18(18):6657-65
pubmed: 20797869
Nucleosides Nucleotides Nucleic Acids. 2008 Dec;27(12):1282-300
pubmed: 19003573
Microbiol Spectr. 2015 Apr;3(2):MB-0003-2014
pubmed: 26104694

Auteurs

Matthias Christen (M)

Eidgenössische Technische Hochschule Zürich, Department of Biology, Auguste-Piccard-Hof 1, 8093, Zürich, Switzerland.

Cassandra Kamischke (C)

University of Washington, Department of Microbiology, 1959 NE Pacific St., Box 357710, Seattle, WA, 98195, USA.

Hemantha D Kulasekara (HD)

University of Washington, Department of Microbiology, 1959 NE Pacific St., Box 357710, Seattle, WA, 98195, USA.

Kathleen C Olivas (KC)

Seattle Genetics, Inc., 21823 30th Drive SE, Bothell, WA, 98021, USA.

Bridget R Kulasekara (BR)

University of Washington, Department of Genome Sciences, 1959 NE Pacific St., Box 357710, Seattle, WA, 98195, USA.

Beat Christen (B)

Eidgenössische Technische Hochschule Zürich, Department of Biology, Otto-Stern-Weg-3, 8093, Zürich, Switzerland.

Toni Kline (T)

Sutro Biopharma, 310 Utah Avenue, Suite 150, San Francisco, CA, 94080, USA.

Samuel I Miller (SI)

University of Washington, Department of Microbiology, 1959 NE Pacific St., Box 357710, Seattle, WA, 98195, USA.

Articles similaires

Humans Chondrocytes Osteoarthritis Matrix Metalloproteinase 13 Drug Discovery
Fucosyltransferases Drug Repositioning Molecular Docking Simulation Molecular Dynamics Simulation Humans
Humans Amyotrophic Lateral Sclerosis Male Middle Aged Female
Escherichia coli Membrane Fluidity Temperature Escherichia coli Proteins Fatty Acids

Classifications MeSH