ECO, the Evidence & Conclusion Ontology: community standard for evidence information.

Animals Computational Biology / methods Databases, Genetic Gene Ontology Humans Information Storage and Retrieval / methods Internet Proteins / genetics Sequence Analysis, Protein User-Computer Interface

Journal

Nucleic acids research
ISSN: 1362-4962
Titre abrégé: Nucleic Acids Res
Pays: England
ID NLM: 0411011

Informations de publication

Date de publication:
08 01 2019
Historique:
received: 14 09 2018
accepted: 16 10 2018
pubmed: 9 11 2018
medline: 19 5 2020
entrez: 9 11 2018
Statut: ppublish

Résumé

The Evidence and Conclusion Ontology (ECO) contains terms (classes) that describe types of evidence and assertion methods. ECO terms are used in the process of biocuration to capture the evidence that supports biological assertions (e.g. gene product X has function Y as supported by evidence Z). Capture of this information allows tracking of annotation provenance, establishment of quality control measures and query of evidence. ECO contains over 1500 terms and is in use by many leading biological resources including the Gene Ontology, UniProt and several model organism databases. ECO is continually being expanded and revised based on the needs of the biocuration community. The ontology is freely available for download from GitHub (https://github.com/evidenceontology/) or the project's website (http://evidenceontology.org/). Users can request new terms or changes to existing terms through the project's GitHub site. ECO is released into the public domain under CC0 1.0 Universal.

Identifiants

DOI: 10.1093/nar/gky1036 PMID: 30407590 PMC: PMC6323956
pubmed: 30407590
pii: 5165344
doi: 10.1093/nar/gky1036
pmc: PMC6323956
doi:

Substances chimiques

Proteins 0

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

D1186-D1194

Subventions

Organisme : NIGMS NIH HHS
ID : R01 GM089636
Pays : United States
Organisme : NHGRI NIH HHS
ID : U41 HG002273
Pays : United States
Organisme : NHGRI NIH HHS
ID : U41 HG008735
Pays : United States

Références

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Auteurs

Michelle Giglio (M)

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA.

Rebecca Tauber (R)

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA.

Suvarna Nadendla (S)

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA.

James Munro (J)

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA.

Dustin Olley (D)

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA.

Shoshannah Ball (S)

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA.

Elvira Mitraka (E)

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA.

Lynn M Schriml (LM)

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA.

Pascale Gaudet (P)

Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.

Elizabeth T Hobbs (ET)

Department of Biological Sciences, University of Maryland Baltimore County, Baltimore, MD 21250, USA.

Ivan Erill (I)

Department of Biological Sciences, University of Maryland Baltimore County, Baltimore, MD 21250, USA.

Deborah A Siegele (DA)

Department of Biology, Texas A&M University, College Station, TX 77840, USA.

James C Hu (JC)

Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77840, USA.

Chris Mungall (C)

Molecular Ecosystems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

Marcus C Chibucos (MC)

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA.

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Classifications MeSH

questionsmedicales.fr › Eucaryotes › Animaux › ECO, the Evidence & Conclusion Ontology:...
questionsmedicales.fr › Sciences de l'information › Informatique › Biologie informatique › ECO, the Evidence & Conclusion Ontology:...
questionsmedicales.fr › Sciences de l'information › Mémorisation et recherche des informations › Bases de données comme sujet › Bases de données factuelles › Bases de données génétiques › ECO, the Evidence & Conclusion Ontology:...
questionsmedicales.fr › Sciences de l'information › Sources d'information › Services d'information › Documentation › Vocabulaire contrôlé › Ontologies biologiques › Gene Ontology › ECO, the Evidence & Conclusion Ontology:...
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Mammifères › Eutheria › Primates › Haplorhini › Catarrhini › Hominidae › Humains › ECO, the Evidence & Conclusion Ontology:...
questionsmedicales.fr › Sciences de l'information › Mémorisation et recherche des informations › ECO, the Evidence & Conclusion Ontology:...
questionsmedicales.fr › Sciences de l'information › Méthodologies informatiques › Systèmes informatiques › Réseaux de communication entre ordinateurs › Internet › ECO, the Evidence & Conclusion Ontology:...
questionsmedicales.fr › Acides aminés, peptides et protéines › Protéines › ECO, the Evidence & Conclusion Ontology:...
questionsmedicales.fr › Techniques d'investigation › Techniques génétiques › Analyse de séquence › Analyse de séquence de protéine › ECO, the Evidence & Conclusion Ontology:...
questionsmedicales.fr › Sciences de l'information › Méthodologies informatiques › Logiciel › Interface utilisateur › ECO, the Evidence & Conclusion Ontology:...