Complex Compound Inheritance of Lethal Lung Developmental Disorders Due to Disruption of the TBX-FGF Pathway.


Journal

American journal of human genetics
ISSN: 1537-6605
Titre abrégé: Am J Hum Genet
Pays: United States
ID NLM: 0370475

Informations de publication

Date de publication:
07 02 2019
Historique:
received: 08 10 2018
accepted: 13 12 2018
pubmed: 15 1 2019
medline: 20 11 2019
entrez: 15 1 2019
Statut: ppublish

Résumé

Primary defects in lung branching morphogenesis, resulting in neonatal lethal pulmonary hypoplasias, are incompletely understood. To elucidate the pathogenetics of human lung development, we studied a unique collection of samples obtained from deceased individuals with clinically and histopathologically diagnosed interstitial neonatal lung disorders: acinar dysplasia (n = 14), congenital alveolar dysplasia (n = 2), and other lethal lung hypoplasias (n = 10). We identified rare heterozygous copy-number variant deletions or single-nucleotide variants (SNVs) involving TBX4 (n = 8 and n = 2, respectively) or FGF10 (n = 2 and n = 2, respectively) in 16/26 (61%) individuals. In addition to TBX4, the overlapping ∼2 Mb recurrent and nonrecurrent deletions at 17q23.1q23.2 identified in seven individuals with lung hypoplasia also remove a lung-specific enhancer region. Individuals with coding variants involving either TBX4 or FGF10 also harbored at least one non-coding SNV in the predicted lung-specific enhancer region, which was absent in 13 control individuals with the overlapping deletions but without any structural lung anomalies. The occurrence of rare coding variants involving TBX4 or FGF10 with the putative hypomorphic non-coding SNVs implies a complex compound inheritance of these pulmonary hypoplasias. Moreover, they support the importance of TBX4-FGF10-FGFR2 epithelial-mesenchymal signaling in human lung organogenesis and help to explain the histopathological continuum observed in these rare lethal developmental disorders of the lung.

Identifiants

pubmed: 30639323
pii: S0002-9297(18)30461-0
doi: 10.1016/j.ajhg.2018.12.010
pmc: PMC6369446
pii:
doi:

Substances chimiques

FGF10 protein, human 0
Fibroblast Growth Factor 10 0
T-Box Domain Proteins 0
TBX4 protein, human 0
FGFR2 protein, human EC 2.7.10.1
Receptor, Fibroblast Growth Factor, Type 2 EC 2.7.10.1

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

213-228

Subventions

Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : NHGRI NIH HHS
ID : UM1 HG006542
Pays : United States
Organisme : NINDS NIH HHS
ID : R35 NS105078
Pays : United States
Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : NHLBI NIH HHS
ID : R01 HL137203
Pays : United States
Organisme : NIGMS NIH HHS
ID : T32 GM007454
Pays : United States

Informations de copyright

Copyright © 2018 American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.

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Auteurs

Justyna A Karolak (JA)

Department of Molecular & Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Department of Genetics and Pharmaceutical Microbiology, Poznan University of Medical Sciences, 60-781 Poznan, Poland.

Marie Vincent (M)

Service de Génétique Médicale, CHU de Nantes, 44000 Nantes, France; Inserm, CNRS, Univ Nantes, l'institut du thorax, 44000 Nantes, France.

Gail Deutsch (G)

Department of Pathology, Seattle Children's Hospital, Seattle, WA 98105, USA.

Tomasz Gambin (T)

Department of Medical Genetics, Institute of Mother and Child, 01-211 Warsaw, Poland; Institute of Computer Science, Warsaw University of Technology, 00-665 Warsaw, Poland.

Benjamin Cogné (B)

Service de Génétique Médicale, CHU de Nantes, 44000 Nantes, France; Inserm, CNRS, Univ Nantes, l'institut du thorax, 44000 Nantes, France.

Olivier Pichon (O)

Service de Génétique Médicale, CHU de Nantes, 44000 Nantes, France.

Francesco Vetrini (F)

Baylor Genetics, Houston, TX 77021, USA.

Heather C Mefford (HC)

Department of Pediatrics, Division of Genetic Medicine, University of Washington, Seattle, WA 98195, USA.

Jennifer N Dines (JN)

Department of Pediatrics, Division of Genetic Medicine, University of Washington, Seattle, WA 98195, USA; Department of Medicine, Division of Medical Genetics, University of Washington, Seattle, WA 98195, USA.

Katie Golden-Grant (K)

Division of Genetic Medicine, Seattle Children's Hospital, Seattle, WA 98105, USA.

Katrina Dipple (K)

Department of Pediatrics, Division of Genetic Medicine, University of Washington, Seattle, WA 98195, USA; Division of Genetic Medicine, Seattle Children's Hospital, Seattle, WA 98105, USA.

Amanda S Freed (AS)

Department of Pediatrics, Division of Genetic Medicine, University of Washington, Seattle, WA 98195, USA; Department of Medicine, Division of Medical Genetics, University of Washington, Seattle, WA 98195, USA.

Kathleen A Leppig (KA)

Genetic Services Kaiser Permanente of Washington, Seattle, WA 98112, USA.

Megan Dishop (M)

Pathology and Laboratory Medicine, Phoenix Children's Hospital, Phoenix, AZ 85016, USA.

David Mowat (D)

Centre for Clinical Genetics, Sydney Children's Hospital, Randwick Sydney, NSW 2031 Australia; School of Women's and Children's Health, The University of New South Wales, Sydney, NSW 2052, Australia.

Bruce Bennetts (B)

Discipline of Child & Adolescent Health, Sydney Medical School, University of Sydney, Sydney, NSW 2006, Australia; Molecular Genetics Department, Western Sydney Genetics Program, The Children's Hospital at Westmead, Sydney, NSW 2145, Australia; Discipline of Genetic Medicine, Sydney Medical School, University of Sydney, Sydney, NSW 2006, Australia.

Andrew J Gifford (AJ)

School of Women's and Children's Health, The University of New South Wales, Sydney, NSW 2052, Australia; Department of Anatomical Pathology, Prince of Wales Hospital, Randwick, NSW 2031, Australia.

Martin A Weber (MA)

Department of Anatomical Pathology, Prince of Wales Hospital, Randwick, NSW 2031, Australia; School of Medical Sciences, University of New South Wales, Sydney, NSW 2052, Australia.

Anna F Lee (AF)

Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, BC V6T 2B5, Canada.

Cornelius F Boerkoel (CF)

Department of Medical Genetics, University of British Columbia, Vancouver, BC V6H 3N1, Canada.

Tina M Bartell (TM)

Department of Genetics, Kaiser Permanente Sacramento Medical Center, Sacramento, CA 95815, USA.

Catherine Ward-Melver (C)

Division of Medical Genetics, Akron Children's Hospital, Akron, OH 44302, USA.

Thomas Besnard (T)

Service de Génétique Médicale, CHU de Nantes, 44000 Nantes, France; Inserm, CNRS, Univ Nantes, l'institut du thorax, 44000 Nantes, France.

Florence Petit (F)

Service de Génétique Clinique, CHU Lille, 59000 Lille, France.

Iben Bache (I)

Department of Cellular and Molecular Medicine, University of Copenhagen, 2200 N Copenhagen, Denmark; Department of Clinical Genetics, Copenhagen University Hospital, Rigshospitalet, 2100 Ø Copenhagen, Denmark.

Zeynep Tümer (Z)

Kennedy Center, Department of Clinical Genetics, Copenhagen University Hospital, Rigshospitalet, 2600 Glostrup, Copenhagen, Denmark; Deparment of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 N, Copenhagen, Denmark.

Marie Denis-Musquer (M)

Service d'anatomo-pathologie, CHU Nantes, 44093 Nantes, France.

Madeleine Joubert (M)

Service d'anatomo-pathologie, CHU Nantes, 44093 Nantes, France.

Jelena Martinovic (J)

Unit of Fetal Pathology, AP-HP, Antoine Beclere Hospital, 75000 Paris, France.

Claire Bénéteau (C)

Service de Génétique Médicale, CHU de Nantes, 44000 Nantes, France; Inserm, CNRS, Univ Nantes, l'institut du thorax, 44000 Nantes, France.

Arnaud Molin (A)

Service de Génétique Médicale, CHU Caen, 14000 Caen, France.

Dominique Carles (D)

Service d'anatomo-pathologie, CHU Bordeaux, 33000 Bordeaux, France.

Gwenaelle André (G)

Service d'anatomo-pathologie, CHU Bordeaux, 33000 Bordeaux, France.

Eric Bieth (E)

Service de génétique médicale, CHU Toulouse, France and UDEAR, UMR 1056 Inserm - Université de Toulouse, 31000 Toulouse, France.

Nicolas Chassaing (N)

Service de génétique médicale, CHU Toulouse, France and UDEAR, UMR 1056 Inserm - Université de Toulouse, 31000 Toulouse, France.

Louise Devisme (L)

Institut de Pathologie, CHU Lille, 59000 Lille, France.

Lara Chalabreysse (L)

Service d'anatomo-pathologie, CHU Lyon, 69000 Lyon, France.

Laurent Pasquier (L)

Service de génétique médicale, CHU Rennes, 35000 Rennes, France.

Véronique Secq (V)

Aix Marseille Univ, APHM, Hôpital Nord, Service d'anatomo-pathologie, 13000 Marseille, France.

Massimiliano Don (M)

Sant'Antonio General Hospital, Pediatric Care Unit, San Daniele del Friuli, 33100 Udine, Italy.

Maria Orsaria (M)

Department of Medical and Biological Sciences, Pathology Unit, University of Udine, Udine, Italy.

Chantal Missirian (C)

Aix Marseille Univ, APHM, INSERM, MMG, Marseille, Timone Hospital, 13000 Marseille, France.

Jérémie Mortreux (J)

Aix Marseille Univ, APHM, INSERM, MMG, Marseille, Timone Hospital, 13000 Marseille, France.

Damien Sanlaville (D)

Hospices Civils de Lyon, GHE, Genetics department, and Lyon University, 69000 Lyon, France.

Linda Pons (L)

Hospices Civils de Lyon, GHE, Genetics department, and Lyon University, 69000 Lyon, France.

Sébastien Küry (S)

Service de Génétique Médicale, CHU de Nantes, 44000 Nantes, France; Inserm, CNRS, Univ Nantes, l'institut du thorax, 44000 Nantes, France.

Stéphane Bézieau (S)

Service de Génétique Médicale, CHU de Nantes, 44000 Nantes, France; Inserm, CNRS, Univ Nantes, l'institut du thorax, 44000 Nantes, France.

Jean-Michel Liet (JM)

Service de réanimation pédiatrique, CHU Nantes, 44000 Nantes, France.

Nicolas Joram (N)

Service de réanimation pédiatrique, CHU Nantes, 44000 Nantes, France.

Tiphaine Bihouée (T)

Service de pédiatrie, CHU Nantes, 44000 Nantes, France.

Daryl A Scott (DA)

Department of Molecular & Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Hospital, Houston, TX 77030, USA; Department of Molecular Physiology and Biophysics, Baylor College of Medicine, Houston, TX 77030, USA.

Chester W Brown (CW)

Department of Pediatrics, Genetics Division, University of Tennessee Health Science Center, Memphis, TN 38163, USA.

Fernando Scaglia (F)

Department of Molecular & Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Hospital, Houston, TX 77030, USA; Joint BCM-CUHK Center of Medical Genetics, Prince of Wales Hospital, ShaTin, New Territories, Hong Kong SAR.

Anne Chun-Hui Tsai (AC)

Department of Pediatrics, The Children's Hospital, University of Colorado School of Medicine, Aurora, CO 80045, USA.

Dorothy K Grange (DK)

Department of Pediatrics, Division of Genetics and Genomic Medicine, Washington University School of Medicine, St. Louis Children's Hospital, St. Louis, MO 63110, USA.

John A Phillips (JA)

Department of Pediatrics, Division of Medical Genetics and Genomic Medicine, Vanderbilt University Medical Center, Nashville, TN 37232, USA.

Jean P Pfotenhauer (JP)

Department of Pediatrics, Division of Medical Genetics and Genomic Medicine, Vanderbilt University Medical Center, Nashville, TN 37232, USA.

Shalini N Jhangiani (SN)

Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.

Claudia G Gonzaga-Jauregui (CG)

Regeneron Genetics Center, Regeneron Pharmaceuticals Inc. Tarrytown, NY 10599, USA.

Wendy K Chung (WK)

Departments of Pediatrics and Medicine, Columbia University, New York, NY 10032, USA.

Galen M Schauer (GM)

Department of Pathology, Kaiser Permanente Oakland Medical Center, Oakland, CA 94611, USA.

Mark H Lipson (MH)

Department of Genetics, Kaiser Permanente Sacramento Medical Center, Sacramento, CA 95815, USA.

Catherine L Mercer (CL)

Wessex Clinical Genetics Service, University Hospital Southampton NHS Foundation Trust, Princess Anne Hospital, Southampton SO16 5YA, UK.

Arie van Haeringen (A)

Department of Clinical Genetics, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands.

Qian Liu (Q)

Department of Molecular & Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.

Edwina Popek (E)

Department of Pathology and Immunology, Baylor College of Medicine, Houston, TX 77030, USA.

Zeynep H Coban Akdemir (ZH)

Department of Molecular & Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.

James R Lupski (JR)

Department of Molecular & Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Hospital, Houston, TX 77030, USA; Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA; Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA.

Przemyslaw Szafranski (P)

Department of Molecular & Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.

Bertrand Isidor (B)

Service de Génétique Médicale, CHU de Nantes, 44000 Nantes, France; Inserm, CNRS, Univ Nantes, l'institut du thorax, 44000 Nantes, France.

Cedric Le Caignec (C)

Service de Génétique Médicale, CHU de Nantes, 44000 Nantes, France. Electronic address: cedric.lecaignec@chu-nantes.fr.

Paweł Stankiewicz (P)

Department of Molecular & Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Baylor Genetics, Houston, TX 77021, USA; Institute of Mother and Child, 01-211 Warsaw, Poland. Electronic address: pawels@bcm.edu.

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