Dual Geometry Schemes in Tetrel Bonds: Complexes between TF₄ (T = Si, Ge, Sn) and Pyridine Derivatives.


Journal

Molecules (Basel, Switzerland)
ISSN: 1420-3049
Titre abrégé: Molecules
Pays: Switzerland
ID NLM: 100964009

Informations de publication

Date de publication:
21 Jan 2019
Historique:
received: 05 01 2019
revised: 18 01 2019
accepted: 18 01 2019
entrez: 24 1 2019
pubmed: 24 1 2019
medline: 12 4 2019
Statut: epublish

Résumé

When an N-base approaches the tetrel atom of TF₄ (T = Si, Ge, Sn) the latter molecule deforms from a tetrahedral structure in the monomer to a trigonal bipyramid. The base can situate itself at either an axial or equatorial position, leading to two different equilibrium geometries. The interaction energies are considerably larger for the equatorial structures, up around 50 kcal/mol, which also have a shorter R(T··N) separation. On the other hand, the energy needed to deform the tetrahedral monomer into the equatorial structure is much higher than the equivalent deformation energy in the axial dimer. When these two opposite trends are combined, it is the axial geometry which is somewhat more stable than the equatorial, yielding binding energies in the 8⁻34 kcal/mol range. There is a clear trend of increasing interaction energy as the tetrel atom grows larger: Si < Ge < Sn, a pattern which is accentuated for the binding energies.

Identifiants

pubmed: 30669688
pii: molecules24020376
doi: 10.3390/molecules24020376
pmc: PMC6359171
pii:
doi:

Substances chimiques

Pyridines 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : Ministerstwo Nauki i Szkolnictwa Wyższego
ID : 0401/0188/17

Déclaration de conflit d'intérêts

There are no conflicts to declare.

Références

Angew Chem Int Ed Engl. 1999 Sep;38(18):2686-2714
pubmed: 10508357
J Am Chem Soc. 2004 Apr 7;126(13):4412-9
pubmed: 15053631
J Am Chem Soc. 2004 Apr 14;126(14):4500-1
pubmed: 15070351
Proc Natl Acad Sci U S A. 2004 Nov 30;101(48):16789-94
pubmed: 15557000
Phys Chem Chem Phys. 2005 Sep 21;7(18):3297-305
pubmed: 16240044
J Chem Phys. 2006 Jan 21;124(3):034108
pubmed: 16438568
Phys Chem Chem Phys. 2006 Mar 7;8(9):1057-65
pubmed: 16633586
J Mol Model. 2007 Feb;13(2):291-6
pubmed: 16927107
J Mol Model. 2007 Feb;13(2):305-11
pubmed: 17013631
J Chem Inf Model. 2007 May-Jun;47(3):1045-52
pubmed: 17428029
J Mol Model. 2009 Jun;15(6):723-9
pubmed: 19082643
Angew Chem Int Ed Engl. 2009;48(22):3924-77
pubmed: 19415701
J Phys Chem A. 2009 Jul 16;113(28):8132-5
pubmed: 19537765
J Mol Model. 2010 Nov;16(11):1679-91
pubmed: 20361346
Phys Chem Chem Phys. 2010 Jul 28;12(28):7748-57
pubmed: 20571692
Chem Rev. 2011 Apr 13;111(4):2597-625
pubmed: 21322583
J Chem Phys. 2011 Mar 7;134(9):094315
pubmed: 21384977
J Mol Model. 2012 Feb;18(2):541-8
pubmed: 21541742
J Mol Model. 2013 Jul;19(7):2739-46
pubmed: 22968690
Chemphyschem. 2013 Feb 4;14(2):278-94
pubmed: 23303575
Phys Chem Chem Phys. 2013 Jul 21;15(27):11178-89
pubmed: 23450152
J Comput Chem. 2013 Jun 15;34(16):1429-37
pubmed: 23483590
J Phys Chem A. 2014 May 1;118(17):3183-92
pubmed: 24720370
J Phys Chem A. 2014 Nov 13;118(45):10849-56
pubmed: 25336119
Chem Commun (Camb). 2015 Jan 28;51(8):1491-3
pubmed: 25493451
J Phys Chem A. 2015 Jan 22;119(3):535-41
pubmed: 25547020
J Chem Phys. 2015 Jan 21;142(3):034307
pubmed: 25612709
J Phys Chem A. 2015 Apr 9;119(14):3518-27
pubmed: 25797149
Angew Chem Int Ed Engl. 2015 Jun 15;54(25):7340-3
pubmed: 25950423
Chemphyschem. 2015 Aug 24;16(12):2496-517
pubmed: 26118675
Phys Chem Chem Phys. 2016 Feb 7;18(5):3581-90
pubmed: 26750543
J Phys Chem A. 2016 Feb 4;120(4):648-56
pubmed: 26756083
Chem Rec. 2016 Feb;16(1):473-87
pubmed: 26814022
Chemistry. 2016 Dec 23;22(52):18850-18858
pubmed: 27740702
J Phys Chem A. 2017 Feb 2;121(4):885-891
pubmed: 28045531
J Phys Chem A. 2017 Feb 16;121(6):1381-1387
pubmed: 28106396
Phys Chem Chem Phys. 2017 Feb 15;19(7):5550-5559
pubmed: 28165072
Chemphyschem. 2017 Jun 20;18(12):1569-1577
pubmed: 28346740
J Phys Chem A. 2017 May 11;121(18):3606-3615
pubmed: 28445043
Phys Chem Chem Phys. 2017 Jun 14;19(23):14884-14896
pubmed: 28561824
J Phys Chem A. 2017 Jul 20;121(28):5371-5376
pubmed: 28665599
J Phys Chem A. 2017 Jul 27;121(29):5561-5568
pubmed: 28682608
Chemphyschem. 2017 Sep 20;18(18):2442-2450
pubmed: 28708276
Phys Chem Chem Phys. 2017 Nov 15;19(44):29742-29759
pubmed: 29105716
Chemphyschem. 2018 Mar 19;19(6):736-743
pubmed: 29194887
Phys Chem Chem Phys. 2018 Jan 24;20(4):2676-2692
pubmed: 29319082
J Phys Chem A. 2018 Mar 8;122(9):2550-2562
pubmed: 29466007
Phys Chem Chem Phys. 2018 Mar 28;20(13):8832-8841
pubmed: 29542785
Chemistry. 2018 Jun 7;24(32):8167-8177
pubmed: 29572983
Molecules. 2018 Apr 14;23(4):null
pubmed: 29662005
Molecules. 2018 May 11;23(5):null
pubmed: 29751608
Molecules. 2018 May 15;23(5):null
pubmed: 29762534
Molecules. 2018 Jun 11;23(6):null
pubmed: 29891824
Molecules. 2018 Jul 10;23(7):null
pubmed: 29996528
Molecules. 2018 Jul 19;23(7):null
pubmed: 30029469
Molecules. 2018 Sep 04;23(9):null
pubmed: 30181450
Chemistry. 2018 Nov 7;24(62):16582-16587
pubmed: 30240074
Molecules. 2018 Oct 15;23(10):null
pubmed: 30326582
Angew Chem Int Ed Engl. 2018 Dec 10;57(50):16496-16500
pubmed: 30347500
Molecules. 2018 Oct 24;23(11):null
pubmed: 30352983
Molecules. 2018 Oct 25;23(11):null
pubmed: 30366391
Molecules. 2018 Nov 13;23(11):null
pubmed: 30428636
Phys Rev B Condens Matter. 1988 Jan 15;37(2):785-789
pubmed: 9944570

Auteurs

Wiktor Zierkiewicz (W)

Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland. wiktor.zierkiewicz@pwr.edu.pl.

Mariusz Michalczyk (M)

Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland. mariusz.michalczyk@pwr.edu.pl.

Rafał Wysokiński (R)

Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland. rafal.wysokinski@pwr.edu.pl.

Steve Scheiner (S)

Department of Chemistry and Biochemistry, Utah State University, Logan, UT 84322-0300, USA. steve.scheiner@usu.edu.

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Classifications MeSH