RiboD: a comprehensive database for prokaryotic riboswitches.
Journal
Bioinformatics (Oxford, England)
ISSN: 1367-4811
Titre abrégé: Bioinformatics
Pays: England
ID NLM: 9808944
Informations de publication
Date de publication:
15 09 2019
15 09 2019
Historique:
received:
12
11
2018
revised:
24
01
2019
accepted:
05
02
2019
pubmed:
7
2
2019
medline:
11
6
2020
entrez:
7
2
2019
Statut:
ppublish
Résumé
Riboswitches are cis-regulatory non-coding genomic segments that control the expression of downstream genes by undergoing conformational change upon ligand binding. We present a comprehensive database of prokaryotic riboswitches that allows the user to search for riboswitches using multiple criteria, extract information about riboswitch location and gene/operon it regulates. RiboD provides a very useful resource that can be utilized for the better understanding of riboswitch-based gene regulation in bacteria and archaea. RiboD can be freely accessed on the web at http://ribod.iiserkol.ac.in/.
Identifiants
pubmed: 30726866
pii: 5307751
doi: 10.1093/bioinformatics/btz093
doi:
Substances chimiques
Riboswitch
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
3541-3543Informations de copyright
© The Author(s) 2019. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.