Map of physical interactions between extracellular domains of Arabidopsis leucine-rich repeat receptor kinases.


Journal

Scientific data
ISSN: 2052-4463
Titre abrégé: Sci Data
Pays: England
ID NLM: 101640192

Informations de publication

Date de publication:
26 02 2019
Historique:
received: 03 10 2018
accepted: 04 01 2019
entrez: 27 2 2019
pubmed: 27 2 2019
medline: 4 6 2019
Statut: epublish

Résumé

Plants use surface receptors to perceive information about many aspects of their local environment. These receptors physically interact to form both steady state and signalling competent complexes. The signalling events downstream of receptor activation impact both plant developmental and immune responses. Here, we present a comprehensive study of the physical interactions between the extracellular domains of leucine-rich repeat receptor kinases (LRR-RKs) in Arabidopsis. Using a sensitized assay, we tested reciprocal interactions among 200 of the 225 Arabidopsis LRR-RKs for a total search space of 40,000 interactions. Applying a stringent statistical cut-off and requiring that interactions performed well in both bait-prey and prey-bait orientations resulted in a high-confidence set of 567 bidirectional interactions. Additionally, we identified a total of 2,586 unidirectional interactions, which passed our stringent statistical cut-off in only one orientation. These datasets will guide further investigation into the regulatory roles of LRR-RKs in plant developmental and immune signalling decisions.

Identifiants

pubmed: 30806640
pii: sdata201925
doi: 10.1038/sdata.2019.25
pmc: PMC6390701
doi:

Substances chimiques

Arabidopsis Proteins 0
Leucine-Rich Repeat Proteins 0
Proteins 0
Protein Kinases EC 2.7.-

Banques de données

figshare
['10.6084/m9.figshare.c.4252694']

Types de publication

Dataset Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

190025

Subventions

Organisme : Austrian Science Fund FWF
ID : T 947
Pays : Austria

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Auteurs

G Adam Mott (GA)

Department of Biology, University of Toronto - Scarborough, 1265 Military Trail, Toronto, Ontario, Canada.
Department of Cell & Systems Biology, University of Toronto, 25 Willcocks St., Toronto, Ontario, Canada.

Elwira Smakowska-Luzan (E)

Gregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna Biocenter (VBC), Dr Bohr Gasse 3, Vienna, 1030, Austria.

Asher Pasha (A)

Department of Biology, University of Toronto - Scarborough, 1265 Military Trail, Toronto, Ontario, Canada.

Katarzyna Parys (K)

Gregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna Biocenter (VBC), Dr Bohr Gasse 3, Vienna, 1030, Austria.

Timothy C Howton (TC)

Department of Biology, University of Alabama at Birmingham, Birmingham, Alabama, USA.

Jana Neuhold (J)

Protein Technologies Facility, Vienna Biocenter Core Facilities (VBCF), Vienna, Austria.

Anita Lehner (A)

Protein Technologies Facility, Vienna Biocenter Core Facilities (VBCF), Vienna, Austria.

Karin Grünwald (K)

Gregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna Biocenter (VBC), Dr Bohr Gasse 3, Vienna, 1030, Austria.

Peggy Stolt-Bergner (P)

Protein Technologies Facility, Vienna Biocenter Core Facilities (VBCF), Vienna, Austria.

Nicholas J Provart (NJ)

Department of Biology, University of Toronto - Scarborough, 1265 Military Trail, Toronto, Ontario, Canada.
Centre for the Analysis of Genome Evolution & Function, 25 Willcocks St., University of Toronto, Toronto, Ontario, Canada.

M Shahid Mukhtar (MS)

Department of Biology, University of Alabama at Birmingham, Birmingham, Alabama, USA.

Darrell Desveaux (D)

Department of Biology, University of Toronto - Scarborough, 1265 Military Trail, Toronto, Ontario, Canada.
Centre for the Analysis of Genome Evolution & Function, 25 Willcocks St., University of Toronto, Toronto, Ontario, Canada.

David S Guttman (DS)

Department of Biology, University of Toronto - Scarborough, 1265 Military Trail, Toronto, Ontario, Canada.
Centre for the Analysis of Genome Evolution & Function, 25 Willcocks St., University of Toronto, Toronto, Ontario, Canada.

Youssef Belkhadir (Y)

Gregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna Biocenter (VBC), Dr Bohr Gasse 3, Vienna, 1030, Austria.

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Classifications MeSH