Reconstruction of the Genetic History and the Current Spread of HIV-1 Subtype A in Germany.

Adult Africa, Eastern / epidemiology Bayes Theorem Epidemics Europe / epidemiology Female Germany / epidemiology HIV Infections / epidemiology HIV Seropositivity HIV-1 / genetics Heterosexuality Homosexuality, Male Humans Male Phylogeny Sexual and Gender Minorities
Germany HIV-1 phylogeography reproduction numbers risk groups spread subtype A transmission cluster

Journal

Journal of virology
ISSN: 1098-5514
Titre abrégé: J Virol
Pays: United States
ID NLM: 0113724

Informations de publication

Date de publication:
15 06 2019
Historique:
received: 16 12 2018
accepted: 13 03 2019
pubmed: 5 4 2019
medline: 24 6 2020
entrez: 5 4 2019
Statut: epublish

Résumé

HIV-1 non-B infections have been increasing in Europe for several years. In Germany, subtype A belongs to the most abundant non-B subtypes showing an increasing prevalence of 8.3% among new infections in 2016. Here we trace the origin and examine the current spread of the German HIV-1 subtype A epidemic. Bayesian coalescence and birth-death analyses were performed with 180 German HIV-1

Identifiants

DOI: 10.1128/JVI.02238-18 PMID: 30944175 PMC: PMC6613759
pubmed: 30944175
pii: JVI.02238-18
doi: 10.1128/JVI.02238-18
pmc: PMC6613759
pii:
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Informations de copyright

Copyright © 2019 American Society for Microbiology.

Références

AIDS Res Hum Retroviruses. 2004 Feb;20(2):245-9
pubmed: 15018713
J Med Virol. 2004 Oct;74(2):191-6
pubmed: 15332265
AIDS Res Hum Retroviruses. 2004 Nov;20(11):1148-56
pubmed: 15588336
AIDS Res Hum Retroviruses. 2006 May;22(5):470-6
pubmed: 16706626
Drug Alcohol Depend. 2006 Apr;82 Suppl 1:S15-22
pubmed: 16769440
AIDS Res Hum Retroviruses. 2006 Aug;22(8):709-14
pubmed: 16910825
AIDS Res Hum Retroviruses. 2006 Aug;22(8):796-800
pubmed: 16910836
J Infect Dis. 2007 Oct 15;196(8):1167-76
pubmed: 17955435
PLoS One. 2008 Jan 02;3(1):e1390
pubmed: 18167549
Int J Environ Res Public Health. 2008 Dec;5(5):378-83
pubmed: 19151432
PLoS One. 2009;4(3):e4724
pubmed: 19266092
AIDS. 2009 Sep 10;23(14):F9-F17
pubmed: 19644346
AIDS Res Hum Retroviruses. 2009 Sep;25(9):853-60
pubmed: 19689193
PLoS Pathog. 2009 Sep;5(9):e1000590
pubmed: 19779560
AIDS Res Hum Retroviruses. 2009 Oct;25(10):1045-8
pubmed: 19803713
PLoS One. 2010 Mar 10;5(3):e9490
pubmed: 20224823
AIDS Res Hum Retroviruses. 2010 Apr;26(4):395-400
pubmed: 20377421
AIDS. 2010 Sep 24;24(15):2397-401
pubmed: 20634664
Lancet Infect Dis. 2011 Jan;11(1):45-56
pubmed: 21126914
AIDS. 2011 Mar 13;25(5):679-89
pubmed: 21297424
AIDS Res Hum Retroviruses. 2012 Feb;28(2):220-4
pubmed: 21770741
Bioinformatics. 2011 Oct 15;27(20):2910-2
pubmed: 21911333
Syst Biol. 2012 Jan;61(1):170-3
pubmed: 21963610
Mol Biol Evol. 2012 Aug;29(8):1969-73
pubmed: 22367748
AIDS Rev. 2012 Apr-Jun;14(2):83-100
pubmed: 22627605
Mol Biol Evol. 2013 Feb;30(2):239-43
pubmed: 23090976
Virology. 2013 Feb 5;436(1):33-48
pubmed: 23123038
Mol Biol Evol. 2013 Mar;30(3):713-24
pubmed: 23180580
AIDS Res Hum Retroviruses. 2013 Apr;29(4):732-7
pubmed: 23186249
Clin Infect Dis. 2013 Mar;56(6):880-7
pubmed: 23223603
Proc Natl Acad Sci U S A. 2013 Jan 2;110(1):228-33
pubmed: 23248286
Retrovirology. 2013 Jan 14;10:7
pubmed: 23317093
Mol Biol Evol. 2013 May;30(5):1188-95
pubmed: 23418397
Infect Genet Evol. 2013 Oct;19:337-48
pubmed: 23660484
AIDS Res Hum Retroviruses. 2014 Feb;30(2):118-26
pubmed: 23947948
PLoS One. 2013 Aug 12;8(8):e71768
pubmed: 23951241
BMC Bioinformatics. 2013 Nov 06;14:317
pubmed: 24191891
AIDS Rev. 2013 Oct-Dec;15(4):204-12
pubmed: 24192601
Syst Biol. 2014 Jul;63(4):493-504
pubmed: 24627184
PLoS Comput Biol. 2014 Apr 10;10(4):e1003537
pubmed: 24722319
J Clin Microbiol. 2014 Aug;52(8):2977-83
pubmed: 24920768
Infect Genet Evol. 2014 Oct;27:121-30
pubmed: 25038296
J Clin Microbiol. 2014 Nov;52(11):4010-6
pubmed: 25232163
Science. 2014 Oct 3;346(6205):56-61
pubmed: 25278604
Mol Biol Evol. 2015 Jan;32(1):268-74
pubmed: 25371430
PLoS Comput Biol. 2014 Dec 04;10(12):e1003919
pubmed: 25474353
Curr HIV Res. 2015;13(3):219-25
pubmed: 25845390
J Med Virol. 2015 Aug;87(8):1327-33
pubmed: 25873310
Infect Genet Evol. 2015 Jul;33:197-205
pubmed: 25952568
Clin Infect Dis. 2015 Nov 1;61(9):1462-8
pubmed: 26129754
J Acquir Immune Defic Syndr. 2015 Dec 1;70(4):428-35
pubmed: 26258569
HIV Med. 2016 Feb;17(2):83-8
pubmed: 26548563
Clin Infect Dis. 2016 Mar 1;62(5):655-663
pubmed: 26620652
Vopr Virusol. 2015;60(4):29-37
pubmed: 26665432
J Infect Dis. 2016 May 1;213(9):1410-8
pubmed: 26704616
PLoS One. 2016 Jan 11;11(1):e0146097
pubmed: 26752062
PLoS One. 2016 Feb 12;11(2):e0147436
pubmed: 26871567
Mol Biol Evol. 2016 Aug;33(8):2102-16
pubmed: 27189573
Infect Genet Evol. 2016 Dec;46:169-179
pubmed: 27262355
Infect Genet Evol. 2016 Dec;46:180-189
pubmed: 27321440
J Acquir Immune Defic Syndr. 2016 Nov 1;73(3):356-363
pubmed: 27400403
Virus Evol. 2016 Apr 09;2(1):vew007
pubmed: 27774300
Euro Surveill. 2017 Jan 12;22(2):
pubmed: 28105988
BMC Infect Dis. 2017 Jul 11;17(1):484
pubmed: 28693564
J Virol Methods. 2018 Sep;259:32-38
pubmed: 29859195
PLoS One. 2018 Nov 8;13(11):e0206234
pubmed: 30408827
Philos Trans R Soc Lond B Biol Sci. 1994 Jun 29;344(1310):403-10
pubmed: 7800710
AIDS Res Hum Retroviruses. 1997 Sep 20;13(14):1195-201
pubmed: 9310286
AIDS. 1997 Oct;11(12):1503-8
pubmed: 9342073
AIDS Res Hum Retroviruses. 1998 Aug 10;14(12):1079-85
pubmed: 9718124

Auteurs

Kirsten Hanke (K)

Division of HIV and Other Retroviruses, Robert Koch Institute, Berlin, Germany hankek@rki.de bannertn@rki.de.

Nuno Rodrigues Faria (NR)

Department of Zoology, University of Oxford, Oxford, United Kingdom.

Denise Kühnert (D)

Department of Environmental Systems Science, ETH Zurich, Zurich, Switzerland.

Kaveh Pouran Yousef (KP)

Department of Mathematics and Computer Science, Mathematics Institute, Freie Universität Berlin, Berlin, Germany.

Andrea Hauser (A)

Division of HIV and Other Retroviruses, Robert Koch Institute, Berlin, Germany.

Karolin Meixenberger (K)

Division of HIV and Other Retroviruses, Robert Koch Institute, Berlin, Germany.

Alexandra Hofmann (A)

Division of HIV/AIDS, STI and Blood-borne Infections, Robert Koch Institute, Berlin, Germany.
Charité University Medicine Berlin, Berlin, Germany.

Viviane Bremer (V)

Division of HIV/AIDS, STI and Blood-borne Infections, Robert Koch Institute, Berlin, Germany.

Barbara Bartmeyer (B)

Division of HIV/AIDS, STI and Blood-borne Infections, Robert Koch Institute, Berlin, Germany.

Oliver Pybus (O)

Department of Zoology, University of Oxford, Oxford, United Kingdom.

Claudia Kücherer (C)

Division of HIV and Other Retroviruses, Robert Koch Institute, Berlin, Germany.

Max von Kleist (M)

Department of Mathematics and Computer Science, Mathematics Institute, Freie Universität Berlin, Berlin, Germany.

Norbert Bannert (N)

Division of HIV and Other Retroviruses, Robert Koch Institute, Berlin, Germany hankek@rki.de bannertn@rki.de.
Institute of Virology, Charité University Medicine Berlin, Berlin, Germany.

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Classifications MeSH

questionsmedicales.fr › Personnes › Tranches d'âge › Adulte › Reconstruction of the Genetic History and the...
questionsmedicales.fr › Régions géographiques › Afrique › Afrique subsaharienne › Afrique de l'Est › Reconstruction of the Genetic History and the...
questionsmedicales.fr › Environnement et santé publique › Santé publique › Méthodes épidémiologiques › Statistiques comme sujet › Probabilité › Théorème de Bayes › Reconstruction of the Genetic History and the...
questionsmedicales.fr › Environnement et santé publique › Santé publique › Épidémies de maladies › Épidémies › Reconstruction of the Genetic History and the...
questionsmedicales.fr › Régions géographiques › Europe › Reconstruction of the Genetic History and the...
questionsmedicales.fr › Régions géographiques › Europe › Allemagne › Reconstruction of the Genetic History and the...
questionsmedicales.fr › Maladies du système immunitaire › Déficits immunitaires › Infections à VIH › Reconstruction of the Genetic History and the...
questionsmedicales.fr › Maladies du système immunitaire › Déficits immunitaires › Infections à VIH › Séropositivité VIH › Reconstruction of the Genetic History and the...
questionsmedicales.fr › Virus › Virus à ARN › Retroviridae › Lentivirus › Lentivirus des primates › VIH (Virus de l'Immunodéficience Humaine) › VIH-1 (Virus de l'Immunodéficience Humaine de type 1) › Reconstruction of the Genetic History and the...
questionsmedicales.fr › Phénomènes physiologiques des appareils urinaire et reproducteur › Phénomènes physiologiques de la reproduction › Sexualité › Hétérosexualité › Reconstruction of the Genetic History and the...
questionsmedicales.fr › Phénomènes physiologiques des appareils urinaire et reproducteur › Phénomènes physiologiques de la reproduction › Sexualité › Homosexualité › Homosexualité masculine › Reconstruction of the Genetic History and the...
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Mammifères › Eutheria › Primates › Haplorhini › Catarrhini › Hominidae › Humains › Reconstruction of the Genetic History and the...
questionsmedicales.fr › Sciences de l'information › Phylogenèse › Reconstruction of the Genetic History and the...
questionsmedicales.fr › Personnes › Disparités en matière de santé, minorités et populations vulnérables › Minorités sexuelles › Reconstruction of the Genetic History and the...