High density DNA data storage library via dehydration with digital microfluidic retrieval.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
12 04 2019
Historique:
received: 11 07 2018
accepted: 08 03 2019
entrez: 14 4 2019
pubmed: 14 4 2019
medline: 10 5 2019
Statut: epublish

Résumé

DNA promises to be a high density data storage medium, but physical storage poses a challenge. To store large amounts of data, pools must be physically isolated so they can share the same addressing scheme. We propose the storage of dehydrated DNA spots on glass as an approach for scalable DNA data storage. The dried spots can then be retrieved by a water droplet using a digital microfluidic device. Here we show that this storage schema works with varying spot organization, spotted masses of DNA, and droplet retrieval dwell times. In all cases, the majority of the DNA was retrieved and successfully sequenced. We demonstrate that the spots can be densely arranged on a microfluidic device without significant contamination of the retrieval. We also demonstrate that 1 TB of data could be stored in a single spot of DNA and successfully retrieved using this method.

Identifiants

pubmed: 30979873
doi: 10.1038/s41467-019-09517-y
pii: 10.1038/s41467-019-09517-y
pmc: PMC6461645
doi:

Substances chimiques

Water 059QF0KO0R
DNA 9007-49-2

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

1706

Références

Anal Chem. 2009 Feb 1;81(3):1061-7
pubmed: 19115860
Bioengineering (Basel). 2017 May 19;4(2):
pubmed: 28952524
J Lab Autom. 2011 Dec;16(6):405-14
pubmed: 22093297
Science. 2012 Sep 28;337(6102):1628
pubmed: 22903519
J Lab Autom. 2012 Jun;17(3):169-85
pubmed: 22357568
Nat Biotechnol. 2018 Mar;36(3):242-248
pubmed: 29457795
Anal Chem. 2010 Mar 15;82(6):2310-6
pubmed: 20151681
Annu Rev Anal Chem (Palo Alto Calif). 2012;5:413-40
pubmed: 22524226
J Vis Exp. 2009 Nov 06;(33):
pubmed: 19898419
Nature. 2013 Feb 7;494(7435):77-80
pubmed: 23354052
Lab Chip. 2008 Dec;8(12):2188-96
pubmed: 19023486
Science. 2017 Mar 3;355(6328):950-954
pubmed: 28254941

Auteurs

Sharon Newman (S)

School of Computer Science and Engineering, University of Washington, Seattle, WA, 98195, USA.
Electrical Engineering Department, Stanford University, Stanford, CA, 94305, USA.

Ashley P Stephenson (AP)

School of Computer Science and Engineering, University of Washington, Seattle, WA, 98195, USA.

Max Willsey (M)

School of Computer Science and Engineering, University of Washington, Seattle, WA, 98195, USA.

Bichlien H Nguyen (BH)

School of Computer Science and Engineering, University of Washington, Seattle, WA, 98195, USA.
Microsoft, Seattle, WA, 98052, USA.

Christopher N Takahashi (CN)

School of Computer Science and Engineering, University of Washington, Seattle, WA, 98195, USA.

Karin Strauss (K)

School of Computer Science and Engineering, University of Washington, Seattle, WA, 98195, USA.
Microsoft, Seattle, WA, 98052, USA.

Luis Ceze (L)

School of Computer Science and Engineering, University of Washington, Seattle, WA, 98195, USA. luisceze@cs.washington.edu.

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Classifications MeSH