FuncTree2: an interactive radial tree for functional hierarchies and omics data visualization.
Journal
Bioinformatics (Oxford, England)
ISSN: 1367-4811
Titre abrégé: Bioinformatics
Pays: England
ID NLM: 9808944
Informations de publication
Date de publication:
01 11 2019
01 11 2019
Historique:
received:
10
06
2018
revised:
01
03
2019
accepted:
14
04
2019
pubmed:
21
4
2019
medline:
2
7
2020
entrez:
21
4
2019
Statut:
ppublish
Résumé
Functional annotations and their hierarchical classification are widely used in omics workflows to build novel insight upon existing biological knowledge. Currently, a plethora of tools is available to explore omics datasets at the level of functional annotations, but there is a lack of feature rich and user-friendly tools that help scientists take advantage of their hierarchical classification for additional and often invaluable insights. Here, we present FuncTree2, a user-friendly web application that turns hierarchical classifications into interactive and highly customizable radial trees, and enables researchers to visualize their data simultaneously on all its levels. FuncTree2 features mapping of data from multiple samples and several navigation features like zooming, panning, re-rooting and collapsing of nodes or levels. FuncTree2 is freely available at https://bioviz.tokyo/functree2/ as a web application and a REST API. Source code is available on GitHub https://github.com/yamada-lab/functree-ng. Supplementary data are available at Bioinformatics online.
Identifiants
pubmed: 31004476
pii: 5475599
doi: 10.1093/bioinformatics/btz245
pmc: PMC6821421
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
4519-4521Informations de copyright
© The Author(s) 2019. Published by Oxford University Press.
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