Mapping the Allosteric Communication Network of Aminodeoxychorismate Synthase.


Journal

Journal of molecular biology
ISSN: 1089-8638
Titre abrégé: J Mol Biol
Pays: Netherlands
ID NLM: 2985088R

Informations de publication

Date de publication:
12 07 2019
Historique:
received: 04 03 2019
revised: 10 05 2019
accepted: 13 05 2019
pubmed: 24 5 2019
medline: 17 6 2020
entrez: 24 5 2019
Statut: ppublish

Résumé

Allosteric communication between different subunits in metabolic enzyme complexes is of utmost physiological importance but only understood for few systems. We analyzed the structural basis of allostery in aminodeoxychorismate synthase (ADCS), which is a member of the family of glutamine amidotransferases and catalyzes the committed step of the folate biosynthetic pathway. ADCS consists of the synthase subunit PabB and the glutaminase subunit PabA, which is allosterically stimulated by the presence of the PabB substrate chorismate. We first solved the crystal structure of a PabA subunit at 1.9-Å resolution. Based on this structure and the known structure of PabB, we computed an atomic model for the ADCS complex. We then used alanine scanning to test the functional role of 59 conserved residues located between the active sites of PabB and PabA. Steady-state kinetic characterization revealed four branches of a conserved network of mainly charged residues that propagate the signal from chorismate at the PabB active site to the PabA active site. The branches eventually lead to activity-inducing transformations at (i) the oxyanion hole motif, (ii) the catalytic Cys-His-Glu triad, and (iii) glutamine binding residues at the PabA active site. We compare our findings with previously postulated activation mechanisms of different glutamine amidotransferases and propose a unifying regulation mechanism for this ubiquitous family of enzymes.

Identifiants

pubmed: 31121180
pii: S0022-2836(19)30293-1
doi: 10.1016/j.jmb.2019.05.021
pii:
doi:

Substances chimiques

Escherichia coli Proteins 0
Protein Subunits 0
Transaminases EC 2.6.1.-
aminodeoxychorismate synthase protein, E coli EC 2.6.1.-
aminodeoxychorismate synthase EC 2.6.1.85
Carbon-Carbon Lyases EC 4.1.-

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

2718-2728

Informations de copyright

Copyright © 2019 Elsevier Ltd. All rights reserved.

Auteurs

Florian Semmelmann (F)

Institute of Biophysics and Physical Biochemistry, University of Regensburg, D-93040 Regensburg, Germany.

Kristina Straub (K)

Institute of Biophysics and Physical Biochemistry, University of Regensburg, D-93040 Regensburg, Germany.

Julian Nazet (J)

Institute of Biophysics and Physical Biochemistry, University of Regensburg, D-93040 Regensburg, Germany.

Chitra Rajendran (C)

Institute of Biophysics and Physical Biochemistry, University of Regensburg, D-93040 Regensburg, Germany.

Rainer Merkl (R)

Institute of Biophysics and Physical Biochemistry, University of Regensburg, D-93040 Regensburg, Germany.

Reinhard Sterner (R)

Institute of Biophysics and Physical Biochemistry, University of Regensburg, D-93040 Regensburg, Germany. Electronic address: Reinhard.Sterner@ur.de.

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Classifications MeSH