Regional and Microenvironmental Scale Characterization of the
amplicon sequencing
bacteria
core
diversity
fungi
microalgae
seagrass microbiome
Journal
Frontiers in microbiology
ISSN: 1664-302X
Titre abrégé: Front Microbiol
Pays: Switzerland
ID NLM: 101548977
Informations de publication
Date de publication:
2019
2019
Historique:
received:
15
01
2019
accepted:
23
04
2019
entrez:
30
5
2019
pubmed:
30
5
2019
medline:
30
5
2019
Statut:
epublish
Résumé
Seagrasses are globally distributed marine plants that represent an extremely valuable component of coastal ecosystems. Like terrestrial plants, seagrass productivity and health are likely to be strongly governed by the structure and function of the seagrass microbiome, which will be distributed across a number of discrete microenvironments within the plant, including the phyllosphere, the endosphere and the rhizosphere, all different in physical and chemical conditions. Here we examined patterns in the composition of the microbiome of the seagrass
Identifiants
pubmed: 31139163
doi: 10.3389/fmicb.2019.01011
pmc: PMC6527750
doi:
Types de publication
Journal Article
Langues
eng
Pagination
1011Commentaires et corrections
Type : ErratumIn
Références
Nat Biotechnol. 2012 Oct;30(10):961-2
pubmed: 23051815
Nature. 2009 Jan 22;457(7228):480-4
pubmed: 19043404
Mol Syst Biol. 2012 Jul 17;8:595
pubmed: 22806143
Trends Microbiol. 2009 Dec;17(12):554-62
pubmed: 19822428
Microorganisms. 2018 Dec 26;7(1):
pubmed: 30587804
Microbes Environ. 2015;30(2):145-50
pubmed: 25786896
FEMS Microbiol Ecol. 2012 Dec;82(3):666-77
pubmed: 22738186
Antimicrob Agents Chemother. 2000 Jun;44(6):1568-74
pubmed: 10817710
Ecol Appl. 2017 Apr;27(3):859-874
pubmed: 27992951
Nat Rev Microbiol. 2004 Aug;2(8):621-31
pubmed: 15263897
PLoS One. 2014 Apr 01;9(4):e92448
pubmed: 24691450
Nature. 2012 Jun 13;486(7402):207-14
pubmed: 22699609
New Phytol. 2016 Jan;209(2):798-811
pubmed: 26467257
Microbiol Mol Biol Rev. 2007 Jun;71(2):295-347
pubmed: 17554047
Proc Natl Acad Sci U S A. 2004 Jul 6;101(27):10107-12
pubmed: 15220484
Ann Rev Mar Sci. 2017 Jan 3;9:231-255
pubmed: 27687974
Ecotoxicology. 2015 Oct;24(7-8):1548-56
pubmed: 26092035
FEMS Microbiol Ecol. 2017 Jun 1;93(6):
pubmed: 28334391
FEMS Microbiol Ecol. 2007 Feb;59(2):342-55
pubmed: 17026513
Microbiol Mol Biol Rev. 2000 Sep;64(3):624-53
pubmed: 10974129
Environ Microbiol. 2014 Mar;16(3):845-55
pubmed: 24033859
Trends Microbiol. 2017 Feb;25(2):125-140
pubmed: 27919551
Persoonia. 2017 Dec;39:51-73
pubmed: 29503470
Microbes Environ. 2014;29(1):67-73
pubmed: 24553106
ISME J. 2012 Jan;6(1):11-20
pubmed: 21716307
Front Microbiol. 2016 Mar 31;7:440
pubmed: 27065991
Plant Cell Environ. 2009 Jun;32(6):666-81
pubmed: 19143988
Appl Environ Microbiol. 2009 Dec;75(23):7537-41
pubmed: 19801464
J Exp Bot. 2005 Jul;56(417):1729-39
pubmed: 15911554
PeerJ. 2017 Apr 27;5:e3246
pubmed: 28462046
Appl Environ Microbiol. 2000 Apr;66(4):1715-9
pubmed: 10742267
Science. 1997 May 2;276(5313):726-33
pubmed: 9115193
Microorganisms. 2017 Dec 15;5(4):
pubmed: 29244764
Sci Adv. 2017 Apr 05;3(4):e1601880
pubmed: 28435876
PLoS One. 2012;7(12):e50854
pubmed: 23226544
Environ Microbiol. 2018 Aug;20(8):2854-2864
pubmed: 29687545
Nature. 2005 Sep 15;437(7057):343-8
pubmed: 16163344
New Phytol. 2015 Jun;206(4):1196-206
pubmed: 25655016
Bioinformatics. 2014 Nov 1;30(21):3123-4
pubmed: 25061070
Nat Rev Microbiol. 2014 Oct;12(10):686-98
pubmed: 25134618
J Bacteriol. 1991 Jan;173(2):697-703
pubmed: 1987160
Nat Microbiol. 2016 Feb 29;1:16005
pubmed: 27572439
N Biotechnol. 2013 Sep 25;30(6):685-94
pubmed: 23410985
Appl Environ Microbiol. 2006 Jul;72(7):5069-72
pubmed: 16820507
Front Microbiol. 2018 Mar 15;9:388
pubmed: 29599758
Front Microbiol. 2016 Apr 08;7:476
pubmed: 27092130
Appl Environ Microbiol. 1978 Jan;35(1):62-6
pubmed: 623473
Environ Sci Technol. 2015 Feb 17;49(4):2286-92
pubmed: 25610948
Front Microbiol. 2018 Jan 11;8:2667
pubmed: 29375529
Stud Mycol. 2009;64:155-173S6
pubmed: 20169029
Mycologia. 2012 May-Jun;104(3):698-714
pubmed: 22241611
Springerplus. 2014 Sep 09;3:508
pubmed: 25279300
Bioinformatics. 2010 Oct 1;26(19):2460-1
pubmed: 20709691
Mol Ecol Resour. 2015 Nov;15(6):1435-45
pubmed: 25740460
Front Microbiol. 2016 Jan 26;6:1438
pubmed: 26858690
Plant Cell Environ. 2017 Nov;40(11):2820-2830
pubmed: 28815648
Front Microbiol. 2014 Jun 24;5:309
pubmed: 25009538
ISME J. 2012 Jul;6(7):1378-90
pubmed: 22189496
Appl Environ Microbiol. 2003 Apr;69(4):1875-83
pubmed: 12676659
Sci Rep. 2013 Oct 07;3:2877
pubmed: 24096888
Nature. 2002 Dec 19-26;420(6917):806-10
pubmed: 12490947
Bioinformatics. 2011 Nov 1;27(21):2957-63
pubmed: 21903629
ISME J. 2012 Mar;6(3):564-76
pubmed: 21993395
Environ Microbiol. 2012 Jan;14(1):4-12
pubmed: 22004523
Front Microbiol. 2018 Jul 30;9:1703
pubmed: 30105009
Appl Microbiol Biotechnol. 2014 Sep;98(17):7365-77
pubmed: 25064352
Microb Ecol. 2016 Feb;71(2):442-51
pubmed: 26093964
Trends Plant Sci. 2012 Aug;17(8):478-86
pubmed: 22564542
Environ Microbiol. 2003 Sep;5(9):754-64
pubmed: 12919411
Nat Commun. 2016 Jun 16;7:11870
pubmed: 27306690
Science. 2002 Mar 15;295(5562):2051
pubmed: 11896270
Appl Environ Microbiol. 2004 Nov;70(11):6753-66
pubmed: 15528542
Appl Environ Microbiol. 2008 Oct;74(19):5948-57
pubmed: 18676705
PeerJ. 2016 Oct 18;4:e2584
pubmed: 27781170
FEMS Microbiol Ecol. 2002 Feb 1;39(2):113-9
pubmed: 19709190
ISME J. 2014 Oct;8(10):2029-44
pubmed: 24722631
Environ Microbiol. 2015 Oct;17(10):4078-88
pubmed: 26148974
FEMS Microbiol Rev. 2013 May;37(3):462-76
pubmed: 23157386
Appl Environ Microbiol. 2008 Jan;74(1):52-60
pubmed: 17965206
Appl Environ Microbiol. 2015 Oct;81(19):6901-14
pubmed: 26209674
Appl Environ Microbiol. 2017 May 31;83(12):
pubmed: 28411219
ISME J. 2015 Jun;9(6):1269-79
pubmed: 25500508
FEMS Microbiol Ecol. 2007 Oct;62(1):108-17
pubmed: 17825072
Syst Appl Microbiol. 2016 Oct;39(7):476-483
pubmed: 27638196
Front Microbiol. 2015 Oct 21;6:1094
pubmed: 26539166
mBio. 2016 Jul 26;7(4):
pubmed: 27460792
FEMS Microbiol Ecol. 2012 Apr;80(1):216-35
pubmed: 22224638
Nat Methods. 2010 May;7(5):335-6
pubmed: 20383131
Plant Cell. 1995 Jul;7(7):869-885
pubmed: 12242391
Trends Ecol Evol. 2010 Apr;25(4):233-40
pubmed: 20006405
Mol Ecol. 2013 Nov;22(21):5271-7
pubmed: 24112409
Mol Plant Microbe Interact. 2015 Mar;28(3):212-7
pubmed: 25514681
Environ Microbiol. 2017 Apr;19(4):1450-1462
pubmed: 28078754
Int J Syst Evol Microbiol. 2009 Sep;59(Pt 9):2195-9
pubmed: 19605727
Front Microbiol. 2017 Jul 13;8:1312
pubmed: 28751881
Environ Microbiol. 2015 Oct;17(10):3678-91
pubmed: 25471738
Microb Ecol. 2000 Jan;39(1):22-31
pubmed: 10790514
ISME J. 2015 Mar 17;9(4):894-908
pubmed: 25325380
Nature. 2012 Aug 2;488(7409):86-90
pubmed: 22859206
J Mol Biol. 1990 Oct 5;215(3):403-10
pubmed: 2231712
FEMS Microbiol Ecol. 2013 May;84(2):421-32
pubmed: 23330958
Bioinformatics. 2011 Aug 15;27(16):2194-200
pubmed: 21700674
Biodegradation. 2010 Jun;21(3):475-89
pubmed: 19946734
Front Microbiol. 2015 Feb 24;6:146
pubmed: 25759688