Tim Kahlke

Affiliations

Climate Change Cluster, University of Technology Sydney, Sydney, NSW, Australia.

Publications (26)

Vibrionaceae core, shell and cloud genes are non-randomly distributed on Chr 1: An hypothesis that links the genomic location of genes with their intracellular placement.

BMC genomics

Avec: Cecilie Bækkedal Sonnenberg , Tim Kahlke , Peik Haugen

Diverse RNA Viruses Associated with Diatom, Eustigmatophyte, Dinoflagellate, and Rhodophyte Microalgae Cultures.

Journal of virology

Avec: Justine Charon , Tim Kahlke , Michaela E Larsson , Raffaela Abbriano , Audrey Commault , Joel Burke , Peter Ralph , Edward C Holmes

Regional and oyster microenvironmental scale heterogeneity in the Pacific oyster bacterial community.

FEMS microbiology ecology

Avec: William L King , Nachshon Siboni , Tim Kahlke , Michael Dove , Wayne O'Connor , Khandaker Rayhan Mahbub , Cheryl Jenkins , Justin R Seymour , Maurizio Labbate

Coral microbiome diversity reflects mass coral bleaching susceptibility during the 2016 El Niño heat wave.

Ecology and evolution

Avec: Stephanie G Gardner , Emma F Camp , David J Smith , Tim Kahlke , Eslam O Osman , Gilberte Gendron , Benjamin C C Hume , Claudia Pogoreutz , Christian R Voolstra , David J Suggett

Temporal Variation in the Microbiome of Tropical and Temperate Octocorals.

Microbial ecology

Avec: Trent D Haydon , David J Suggett , Nachshon Siboni , Tim Kahlke , Emma F Camp , Justin R Seymour

Biogeographical and seasonal dynamics of the marine Roseobacter community and ecological links to DMSP-producing phytoplankton.

ISME communications

Avec: James O'Brien , Erin L McParland , Anna R Bramucci , Nachshon Siboni , Martin Ostrowski , Tim Kahlke , Naomi M Levine , Mark V Brown , Jodie van de Kamp , Levente Bodrossy , Lauren F Messer , Katherina Petrou , Justin R Seymour

Revealing changes in the microbiome of Symbiodiniaceae under thermal stress.

Environmental microbiology

Avec: Emma F Camp , Tim Kahlke , Matthew R Nitschke , Deepa Varkey , Nerissa L Fisher , Lisa Fujise , Samantha Goyen , David J Hughes , Caitlin A Lawson , Mickael Ros , Stephen Woodcock , Kun Xiao , William Leggat , David J Suggett

Unlocking the phylogenetic diversity, primary habitats, and abundances of free-living Symbiodiniaceae on a coral reef.

Molecular ecology

Avec: Lisa Fujise , David J Suggett , Michael Stat , Tim Kahlke , Michael Bunce , Stephanie G Gardner , Samantha Goyen , Stephen Woodcock , Peter J Ralph , Justin R Seymour , Nachshon Siboni , Matthew R Nitschke

Regional and Microenvironmental Scale Characterization of the

Frontiers in microbiology

Avec: Valentina Hurtado-McCormick , Tim Kahlke , Katherina Petrou , Thomas Jeffries , Peter J Ralph , Justin Robert Seymour

Transcriptome profiling analysis of the seagrass, Zostera muelleri under copper stress.

Marine pollution bulletin

Avec: Nasim Shah Mohammadi , Pimchanok Buapet , Mathieu Pernice , Bethany Signal , Tim Kahlke , Leo Hardke , Peter J Ralph

Emerging Technologies in Algal Biotechnology: Toward the Establishment of a Sustainable, Algae-Based Bioeconomy.

Frontiers in plant science

Avec: Michele Fabris , Raffaela M Abbriano , Mathieu Pernice , Donna L Sutherland , Audrey S Commault , Christopher C Hall , Leen Labeeuw , Janice I McCauley , Unnikrishnan Kuzhiuparambil , Parijat Ray , Tim Kahlke , Peter J Ralph

Symbiodiniaceae-bacteria interactions: rethinking metabolite exchange in reef-building corals as multi-partner metabolic networks.

Environmental microbiology

Avec: Jennifer L Matthews , Jean-Baptiste Raina , Tim Kahlke , Justin R Seymour , Madeleine J H van Oppen , David J Suggett

Genome sequencing as a new window into the microbial community of membrane bioreactors - A critical review.

The Science of the total environment

Avec: Luong N Nguyen , Audrey S Commault , Tim Kahlke , Peter J Ralph , Galilee U Semblante , Md Abu Hasan Johir , Long D Nghiem

Corrigendum: Regional and Microenvironmental Scale Characterization of the

Frontiers in microbiology

Avec: Valentina Hurtado-McCormick , Tim Kahlke , Katherina Petrou , Thomas Jeffries , Peter J Ralph , Justin Robert Seymour

how_are_we_stranded_here: quick determination of RNA-Seq strandedness.

BMC bioinformatics

Avec: Brandon Signal , Tim Kahlke

Whole-genome duplication in an algal symbiont bolsters coral heat tolerance.

Science advances

Avec: Katherine E Dougan , Anthony J Bellantuono , Tim Kahlke , Raffaela M Abbriano , Yibi Chen , Sarah Shah , Camila Granados-Cifuentes , Madeleine J H van Oppen , Debashish Bhattacharya , David J Suggett , Mauricio Rodriguez-Lanetty , Cheong Xin Chan

Variability in the Composition of Pacific Oyster Microbiomes Across Oyster Families Exhibiting Different Levels of Susceptibility to OsHV-1 μvar Disease.

Frontiers in microbiology

Avec: William L King , Nachshon Siboni , Nathan L R Williams , Tim Kahlke , Khue Viet Nguyen , Cheryl Jenkins , Michael Dove , Wayne O'Connor , Justin R Seymour , Maurizio Labbate

Highly heterogeneous temporal dynamics in the abundance and diversity of the emerging pathogens Arcobacter at an urban beach.

Water research

Avec: Richard L Carney , Mark V Brown , Nachshon Siboni , Jean-Baptiste Raina , Tim Kahlke , Simon M Mitrovic , Justin R Seymour

Perspectives for Glyco-Engineering of Recombinant Biopharmaceuticals from Microalgae.

Cells

Avec: Lorenzo Barolo , Raffaela M Abbriano , Audrey S Commault , Jestin George , Tim Kahlke , Michele Fabris , Matthew P Padula , Angelo Lopez , Peter J Ralph , Mathieu Pernice

Metabolic Engineering Strategies in Diatoms Reveal Unique Phenotypes and Genetic Configurations With Implications for Algal Genetics and Synthetic Biology.

Frontiers in bioengineering and biotechnology

Avec: Jestin George , Tim Kahlke , Raffaela M Abbriano , Unnikrishnan Kuzhiumparambil , Peter J Ralph , Michele Fabris

A New High Throughput Sequencing Assay for Characterizing the Diversity of Natural

Frontiers in microbiology

Avec: William L King , Nachshon Siboni , Tim Kahlke , Timothy J Green , Maurizio Labbate , Justin R Seymour

Mucospheres produced by a mixotrophic protist impact ocean carbon cycling.

Nature communications

Avec: Michaela E Larsson , Anna R Bramucci , Sinead Collins , Gustaaf Hallegraeff , Tim Kahlke , Jean-Baptiste Raina , Justin R Seymour , Martina A Doblin

Temperature variability interacts with mean temperature to influence the predictability of microbial phenotypes.

Global change biology

Avec: Fei-Xue Fu , Bernhard Tschitschko , David A Hutchins , Michaela E Larsson , Kirralee G Baker , Allison McInnes , Tim Kahlke , Arjun Verma , Shauna A Murray , Martina A Doblin

Proteome metabolome and transcriptome data for three Symbiodiniaceae under ambient and heat stress conditions.

Scientific data

Avec: Emma F Camp , Tim Kahlke , Brandon Signal , Clinton A Oakley , Adrian Lutz , Simon K Davy , David J Suggett , William P Leggat

Response of planktonic microbial assemblages to disturbance in an urban sub-tropical estuary.

Water research

Avec: Penelope A Ajani , Henna Savela , Tim Kahlke , Daniel Harrison , Thomas Jeffries , Gurjeet S Kohli , Arjun Verma , Olivier Laczka , Martina A Doblin , Justin R Seymour , Michaela E Larsson , Jaimie Potts , Peter Scanes , Paul E Gribben , Luke Harrison , Shauna A Murray

Mobilization of a diatom mutator-like element (MULE) transposon inactivates the uridine monophosphate synthase (UMPS) locus in Phaeodactylum tricornutum.

The Plant journal : for cell and molecular biology

Avec: Raffaela M Abbriano , Jestin George , Tim Kahlke , Audrey S Commault , Michele Fabris

Réseau de co-auteurs

Justin R Seymour 10 collaborations

Peter J Ralph 8 collaborations

Nachshon Siboni 7 collaborations

David J Suggett 7 collaborations

Raffaela M Abbriano 5 collaborations

Michaela E Larsson 4 collaborations

Emma F Camp 4 collaborations

Michele Fabris 4 collaborations

Audrey S Commault 4 collaborations

William L King 3 collaborations

Maurizio Labbate 3 collaborations

Katherina Petrou 3 collaborations

Thomas Jeffries 3 collaborations

Mathieu Pernice 3 collaborations

Jean-Baptiste Raina 3 collaborations

Jestin George 3 collaborations

Martina A Doblin 3 collaborations

Michael Dove 2 collaborations

Wayne O'Connor 2 collaborations

Cheryl Jenkins 2 collaborations

Stephanie G Gardner 2 collaborations

Anna R Bramucci 2 collaborations

Mark V Brown 2 collaborations

Matthew R Nitschke 2 collaborations

Lisa Fujise 2 collaborations

Samantha Goyen 2 collaborations

Stephen Woodcock 2 collaborations

Valentina Hurtado-McCormick 2 collaborations

Justin Robert Seymour 2 collaborations

Madeleine J H van Oppen 2 collaborations

Brandon Signal 2 collaborations

Arjun Verma 2 collaborations

Shauna A Murray 2 collaborations

Cecilie Bækkedal Sonnenberg 1 collaboration

Peik Haugen 1 collaboration

Justine Charon 1 collaboration

Raffaela Abbriano 1 collaboration

Audrey Commault 1 collaboration

Joel Burke 1 collaboration

Peter Ralph 1 collaboration

Edward C Holmes 1 collaboration

Khandaker Rayhan Mahbub 1 collaboration

David J Smith 1 collaboration

Eslam O Osman 1 collaboration

Gilberte Gendron 1 collaboration

Benjamin C C Hume 1 collaboration

Claudia Pogoreutz 1 collaboration

Christian R Voolstra 1 collaboration

Trent D Haydon 1 collaboration

James O'Brien 1 collaboration

Erin L McParland 1 collaboration

Martin Ostrowski 1 collaboration

Naomi M Levine 1 collaboration

Jodie van de Kamp 1 collaboration

Levente Bodrossy 1 collaboration

Lauren F Messer 1 collaboration

Deepa Varkey 1 collaboration

Nerissa L Fisher 1 collaboration

David J Hughes 1 collaboration

Caitlin A Lawson 1 collaboration

Mickael Ros 1 collaboration

Kun Xiao 1 collaboration

William Leggat 1 collaboration

Michael Stat 1 collaboration

Michael Bunce 1 collaboration

Nasim Shah Mohammadi 1 collaboration

Pimchanok Buapet 1 collaboration

Bethany Signal 1 collaboration

Leo Hardke 1 collaboration

Donna L Sutherland 1 collaboration

Christopher C Hall 1 collaboration

Leen Labeeuw 1 collaboration

Janice I McCauley 1 collaboration

Unnikrishnan Kuzhiuparambil 1 collaboration

Parijat Ray 1 collaboration

Jennifer L Matthews 1 collaboration

Luong N Nguyen 1 collaboration

Galilee U Semblante 1 collaboration

Md Abu Hasan Johir 1 collaboration

Long D Nghiem 1 collaboration

Katherine E Dougan 1 collaboration

Anthony J Bellantuono 1 collaboration

Yibi Chen 1 collaboration

Sarah Shah 1 collaboration

Camila Granados-Cifuentes 1 collaboration

Debashish Bhattacharya 1 collaboration

Mauricio Rodriguez-Lanetty 1 collaboration

Cheong Xin Chan 1 collaboration

Nathan L R Williams 1 collaboration

Khue Viet Nguyen 1 collaboration

Richard L Carney 1 collaboration

Simon M Mitrovic 1 collaboration

Lorenzo Barolo 1 collaboration

Matthew P Padula 1 collaboration

Angelo Lopez 1 collaboration

Unnikrishnan Kuzhiumparambil 1 collaboration

Timothy J Green 1 collaboration

Sinead Collins 1 collaboration

Gustaaf Hallegraeff 1 collaboration

Fei-Xue Fu 1 collaboration

Bernhard Tschitschko 1 collaboration

David A Hutchins 1 collaboration

Kirralee G Baker 1 collaboration

Allison McInnes 1 collaboration

Clinton A Oakley 1 collaboration

Adrian Lutz 1 collaboration

Simon K Davy 1 collaboration

William P Leggat 1 collaboration

Penelope A Ajani 1 collaboration

Henna Savela 1 collaboration

Daniel Harrison 1 collaboration

Gurjeet S Kohli 1 collaboration

Olivier Laczka 1 collaboration

Jaimie Potts 1 collaboration

Peter Scanes 1 collaboration

Paul E Gribben 1 collaboration

Luke Harrison 1 collaboration