Horizontal transfer between loose compartments stabilizes replication of fragmented ribozymes.


Journal

PLoS computational biology
ISSN: 1553-7358
Titre abrégé: PLoS Comput Biol
Pays: United States
ID NLM: 101238922

Informations de publication

Date de publication:
06 2019
Historique:
received: 18 01 2019
accepted: 12 05 2019
revised: 18 06 2019
pubmed: 7 6 2019
medline: 4 12 2019
entrez: 7 6 2019
Statut: epublish

Résumé

The emergence of replicases that can replicate themselves is a central issue in the origin of life. Recent experiments suggest that such replicases can be realized if an RNA polymerase ribozyme is divided into fragments short enough to be replicable by the ribozyme and if these fragments self-assemble into a functional ribozyme. However, the continued self-replication of such replicases requires that the production of every essential fragment be balanced and sustained. Here, we use mathematical modeling to investigate whether and under what conditions fragmented replicases achieve continued self-replication. We first show that under a simple batch condition, the replicases fail to display continued self-replication owing to positive feedback inherent in these replicases. This positive feedback inevitably biases replication toward a subset of fragments, so that the replicases eventually fail to sustain the production of all essential fragments. We then show that this inherent instability can be resolved by small rates of random content exchange between loose compartments (i.e., horizontal transfer). In this case, the balanced production of all fragments is achieved through negative frequency-dependent selection operating in the population dynamics of compartments. The horizontal transfer also ensures the presence of all essential fragments in each compartment, sustaining self-replication. Taken together, our results underline compartmentalization and horizontal transfer in the origin of the first self-replicating replicases.

Identifiants

pubmed: 31170146
doi: 10.1371/journal.pcbi.1007094
pii: PCOMPBIOL-D-19-00093
pmc: PMC6581272
doi:

Substances chimiques

RNA, Catalytic 0
RNA-Dependent RNA Polymerase EC 2.7.7.48

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e1007094

Déclaration de conflit d'intérêts

The authors have declared that no competing interests exist.

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Auteurs

Atsushi Kamimura (A)

Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, Komaba, Meguro-ku, Tokyo, Japan.

Yoshiya J Matsubara (YJ)

Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, Komaba, Meguro-ku, Tokyo, Japan.

Kunihiko Kaneko (K)

Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, Komaba, Meguro-ku, Tokyo, Japan.
Research Center for Complex Systems Biology, Universal Biology Institute, The University of Tokyo, Komaba, Meguro-ku, Tokyo, Japan.

Nobuto Takeuchi (N)

Research Center for Complex Systems Biology, Universal Biology Institute, The University of Tokyo, Komaba, Meguro-ku, Tokyo, Japan.
School of Biological Sciences, The University of Auckland, Private Bag, Auckland, New Zealand.

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Classifications MeSH