Abundance of bacterial Type VI secretion system components measured by targeted proteomics.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
13 06 2019
Historique:
received: 03 11 2018
accepted: 13 05 2019
entrez: 15 6 2019
pubmed: 15 6 2019
medline: 10 7 2019
Statut: epublish

Résumé

The Type VI secretion system (T6SS) is important for bacterial competition as well as virulence in many Gram-negative bacteria and its dynamics and regulation varies significantly between species. To gain insights into the mechanisms regulating T6SS assembly, we apply targeted proteomics to determine the abundance of the key T6SS components in Vibrio cholerae, Pseudomonas aeruginosa and Acinetobacter baylyi. We show that while there are species specific exceptions, the abundance of most components is similar in all three bacteria and ranges from less than hundred to tens of thousands of copies per cell. The comparison of T6SS dynamics and protein abundance in V. cholerae grown under various conditions suggests that the critical component TssE and the secreted protein VasX are unstable and this diminishes T6SS assembly when protein synthesis is limited. Our quantitative analysis opens possibilities to build realistic models of T6SS assembly and to identify principles of T6SS regulation in various species.

Identifiants

pubmed: 31197144
doi: 10.1038/s41467-019-10466-9
pii: 10.1038/s41467-019-10466-9
pmc: PMC6565705
doi:

Substances chimiques

Bacterial Proteins 0
Type VI Secretion Systems 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

2584

Subventions

Organisme : Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation)
ID : BSSGI0_155778
Pays : International

Références

Cell. 2015 Feb 26;160(5):952-962
pubmed: 25723169
Nature. 2016 Mar 3;531(7592):59-63
pubmed: 26909579
mBio. 2016 Oct 11;7(5):
pubmed: 27729508
Nat Biotechnol. 2009 Jul;27(7):633-41
pubmed: 19561596
Infect Immun. 2016 Jul 21;84(8):2355-2361
pubmed: 27271742
Nature. 2015 Jul 30;523(7562):555-60
pubmed: 26200339
Environ Microbiol. 2013 Feb;15(2):471-86
pubmed: 22765374
J Proteome Res. 2016 Aug 5;15(8):2537-47
pubmed: 27345528
Nat Biotechnol. 2016 Jan;34(1):104-10
pubmed: 26641532
Nat Microbiol. 2018 Nov;3(11):1304-1313
pubmed: 30275513
Nat Cell Biol. 2007 Jul;9(7):797-803
pubmed: 17558395
Science. 2006 Jun 9;312(5779):1526-30
pubmed: 16763151
Cell Host Microbe. 2014 Jan 15;15(1):9-21
pubmed: 24332978
Proc Natl Acad Sci U S A. 2013 Feb 12;110(7):2623-8
pubmed: 23362380
EMBO Rep. 2017 Jan;18(1):138-149
pubmed: 27920034
J Biol Chem. 2014 Nov 21;289(47):33032-43
pubmed: 25305017
PLoS Pathog. 2011 Nov;7(11):e1002386
pubmed: 22102820
J Biol Chem. 2013 Sep 20;288(38):27031-41
pubmed: 23921384
Cell. 2009 Aug 21;138(4):795-806
pubmed: 19664813
Nucleic Acids Res. 2017 Jan 4;45(D1):D1100-D1106
pubmed: 27924013
Nat Microbiol. 2018 May;3(5):632-640
pubmed: 29632369
Science. 2012 Aug 17;337(6096):815
pubmed: 22767897
J Mol Biol. 1991 Dec 5;222(3):599-620
pubmed: 1748995
EMBO J. 2009 Feb 18;28(4):315-25
pubmed: 19131969
Proteomics. 2012 Apr;12(8):1111-21
pubmed: 22577012
Structure. 2018 Feb 6;26(2):329-336.e3
pubmed: 29307484
Nat Methods. 2012 Jun 28;9(7):676-82
pubmed: 22743772
J Bacteriol. 2009 Jul;191(13):4316-29
pubmed: 19395482
Curr Opin Microbiol. 2016 Feb;29:81-93
pubmed: 26722980
PLoS One. 2011;6(8):e23876
pubmed: 21909372
Philos Trans R Soc Lond B Biol Sci. 2015 Oct 5;370(1679):
pubmed: 26370934
Mol Microbiol. 2009 Jun;72(5):1111-25
pubmed: 19400797
Cell. 2016 Apr 21;165(3):535-50
pubmed: 27104977
Proc Natl Acad Sci U S A. 2003 Jun 10;100(12):6940-5
pubmed: 12771378
Bioessays. 2017 Oct;39(10):
pubmed: 28817192
Cell Host Microbe. 2013 May 15;13(5):602-612
pubmed: 23684311
Proc Natl Acad Sci U S A. 2006 Jan 31;103(5):1528-33
pubmed: 16432199
Nat Microbiol. 2016 Jun 24;1(7):16104
pubmed: 27572982
Mol Microbiol. 2013 Mar;87(5):1013-28
pubmed: 23289512
Cell. 2013 Feb 14;152(4):884-94
pubmed: 23415234
Microbiology (Reading). 2011 Dec;157(Pt 12):3292-3305
pubmed: 21873404
Nucleic Acids Res. 2019 Jan 8;47(D1):D442-D450
pubmed: 30395289
Trends Cell Biol. 2017 Sep;27(9):623-632
pubmed: 28602424
Nature. 2000 Aug 31;406(6799):959-64
pubmed: 10984043
Cell Host Microbe. 2010 Jan 21;7(1):25-37
pubmed: 20114026
Nat Microbiol. 2017 Nov;2(11):1507-1512
pubmed: 28947741
Nature. 2012 Feb 26;483(7388):182-6
pubmed: 22367545
Proc Natl Acad Sci U S A. 2009 Mar 17;106(11):4154-9
pubmed: 19251641
Mol Microbiol. 2010 Feb;75(4):886-99
pubmed: 20487285
IEEE Trans Image Process. 1998;7(1):27-41
pubmed: 18267377
Science. 2013 Oct 11;342(6155):250-3
pubmed: 24115441
Dev Cell. 2004 Nov;7(5):745-54
pubmed: 15525535
Nature. 2013 Aug 15;500(7462):350-353
pubmed: 23925114
Mol Syst Biol. 2014 Oct 30;10:757
pubmed: 25358341
Annu Rev Microbiol. 2012;66:453-72
pubmed: 22746332
Mol Cell Proteomics. 2012 Nov;11(11):1475-88
pubmed: 22865924
J Bacteriol. 2010 Aug;192(15):3850-60
pubmed: 20511495
Nat Rev Microbiol. 2015 Jun;13(6):343-59
pubmed: 25978706
Nat Methods. 2012 May 30;9(6):555-66
pubmed: 22669653
Nat Commun. 2017 Jul 13;8:16088
pubmed: 28703218
Curr Opin Struct Biol. 2018 Apr;49:77-84
pubmed: 29414515
EMBO J. 2018 Feb 15;37(4):
pubmed: 29255010
Cell Rep. 2017 Dec 26;21(13):3927-3940
pubmed: 29281838
Nat Commun. 2017 Jun 16;8:15853
pubmed: 28621333
EMBO J. 2016 Aug 1;35(15):1613-27
pubmed: 27288401
Mol Microbiol. 2011 Dec;82(5):1277-90
pubmed: 22017253
Plasmid. 1996 Jan;35(1):1-13
pubmed: 8693022
Cell. 2016 Sep 22;167(1):99-110.e12
pubmed: 27616061
J Bacteriol. 1995 Jul;177(14):4121-30
pubmed: 7608087
Proc Natl Acad Sci U S A. 2010 Nov 9;107(45):19520-4
pubmed: 20974937
Infect Immun. 2011 Jul;79(7):2941-9
pubmed: 21555399
PLoS Pathog. 2013;9(12):e1003752
pubmed: 24348240
J Med Microbiol. 2013 May;62(Pt 5):663-676
pubmed: 23429693

Auteurs

Lin Lin (L)

Biozentrum, University of Basel, CH 4056, Basel, Switzerland.

Emmanuelle Lezan (E)

Proteomics Core Facility, Biozentrum, University of Basel, CH 4056, Basel, Switzerland.
Roche Innovation Center Basel, CH 4070, Basel, Switzerland.

Alexander Schmidt (A)

Proteomics Core Facility, Biozentrum, University of Basel, CH 4056, Basel, Switzerland.

Marek Basler (M)

Biozentrum, University of Basel, CH 4056, Basel, Switzerland. marek.basler@unibas.ch.

Articles similaires

Photosynthesis Ribulose-Bisphosphate Carboxylase Carbon Dioxide Molecular Dynamics Simulation Cyanobacteria
Humans Arthritis, Rheumatoid Lipid Metabolism Male Female

Two codependent routes lead to high-level MRSA.

Abimbola Feyisara Adedeji-Olulana, Katarzyna Wacnik, Lucia Lafage et al.
1.00
Methicillin-Resistant Staphylococcus aureus Penicillin-Binding Proteins Peptidoglycan Bacterial Proteins Anti-Bacterial Agents

Classifications MeSH