Deep learning for the classification of human sperm.

Convolutional neural network Deep learning Fertility Sperm diagnostics Sperm head classification Sperm selection Transfer learning

Journal

Computers in biology and medicine
ISSN: 1879-0534
Titre abrégé: Comput Biol Med
Pays: United States
ID NLM: 1250250

Informations de publication

Date de publication:
08 2019
Historique:
received: 27 11 2018
revised: 21 06 2019
accepted: 22 06 2019
pubmed: 7 7 2019
medline: 9 9 2020
entrez: 7 7 2019
Statut: ppublish

Résumé

Infertility is a global health concern, and couples are increasingly seeking medical assistance to achieve reproduction. Semen analysis is a primary assessment performed by a clinician, in which the morphology of the sperm population is evaluated. Machine learning algorithms that automate, standardize, and expedite sperm classification are the subject of ongoing research. We demonstrate a deep learning method to classify sperm into one of several World Health Organization (WHO) shape-based categories. Our method uses VGG16, a deep convolutional neural network (CNN) initially trained on ImageNet, a collection of human-annotated everyday images, which we retrain for sperm classification using two freely-available sperm head datasets (HuSHeM and SCIAN). Our deep learning approach classifies sperm at high accuracy and performs well in head-to-head comparisons with earlier approaches using identical datasets. We demonstrate improvement in true positive rate over a classifier approach based on a cascade ensemble of support vector machines (CE-SVM) and show similar true positive rates as compared to an adaptive patch-based dictionary learning (APDL) method. Retraining an off-the-shelf VGG16 network avoids excessive neural network computation or having to learn and use the massive dictionaries required for sparse representation, both of which can be computationally expensive. We show that our deep learning approach to sperm head classification represents a viable method to automate, standardize, and accelerate semen analysis. Our approach highlights the potential of artificial intelligence technologies to eventually exceed human experts in terms of accuracy, reliability, and throughput.

Sections du résumé

BACKGROUND
Infertility is a global health concern, and couples are increasingly seeking medical assistance to achieve reproduction. Semen analysis is a primary assessment performed by a clinician, in which the morphology of the sperm population is evaluated. Machine learning algorithms that automate, standardize, and expedite sperm classification are the subject of ongoing research.
METHOD
We demonstrate a deep learning method to classify sperm into one of several World Health Organization (WHO) shape-based categories. Our method uses VGG16, a deep convolutional neural network (CNN) initially trained on ImageNet, a collection of human-annotated everyday images, which we retrain for sperm classification using two freely-available sperm head datasets (HuSHeM and SCIAN).
RESULTS
Our deep learning approach classifies sperm at high accuracy and performs well in head-to-head comparisons with earlier approaches using identical datasets. We demonstrate improvement in true positive rate over a classifier approach based on a cascade ensemble of support vector machines (CE-SVM) and show similar true positive rates as compared to an adaptive patch-based dictionary learning (APDL) method. Retraining an off-the-shelf VGG16 network avoids excessive neural network computation or having to learn and use the massive dictionaries required for sparse representation, both of which can be computationally expensive.
CONCLUSIONS
We show that our deep learning approach to sperm head classification represents a viable method to automate, standardize, and accelerate semen analysis. Our approach highlights the potential of artificial intelligence technologies to eventually exceed human experts in terms of accuracy, reliability, and throughput.

Identifiants

pubmed: 31279166
pii: S0010-4825(19)30211-2
doi: 10.1016/j.compbiomed.2019.103342
pii:
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

103342

Subventions

Organisme : CIHR
ID : CPG 508388-17
Pays : Canada

Informations de copyright

Copyright © 2019 Elsevier Ltd. All rights reserved.

Auteurs

Jason Riordon (J)

Department of Mechanical and Industrial Engineering, University of Toronto, 5 King's College Road, Toronto, ON, M5S 3G8, Canada. Electronic address: jason.riordon@utoronto.ca.

Christopher McCallum (C)

Department of Mechanical and Industrial Engineering, University of Toronto, 5 King's College Road, Toronto, ON, M5S 3G8, Canada. Electronic address: christopher.mccallum@utoronto.ca.

David Sinton (D)

Department of Mechanical and Industrial Engineering, University of Toronto, 5 King's College Road, Toronto, ON, M5S 3G8, Canada. Electronic address: sinton@mie.utoronto.ca.

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