The uncertainty with using risk prediction models for individual decision making: an exemplar cohort study examining the prediction of cardiovascular disease in English primary care.
Adult
Aged
Aged, 80 and over
Cardiovascular Diseases
/ diagnosis
Cohort Studies
Decision Making
Decision Support Techniques
England
/ epidemiology
Female
Humans
Hydroxymethylglutaryl-CoA Reductase Inhibitors
/ therapeutic use
Incidence
Male
Middle Aged
Precision Medicine
/ methods
Primary Health Care
/ methods
Risk Assessment
/ methods
Risk Factors
Uncertainty
Cardiovascular disease
Primary care
Risk prediction
Uncertainty analysis
Journal
BMC medicine
ISSN: 1741-7015
Titre abrégé: BMC Med
Pays: England
ID NLM: 101190723
Informations de publication
Date de publication:
17 07 2019
17 07 2019
Historique:
received:
06
02
2019
accepted:
14
06
2019
entrez:
18
7
2019
pubmed:
18
7
2019
medline:
7
11
2019
Statut:
epublish
Résumé
Risk prediction models are commonly used in practice to inform decisions on patients' treatment. Uncertainty around risk scores beyond the confidence interval is rarely explored. We conducted an uncertainty analysis of the QRISK prediction tool to evaluate the robustness of individual risk predictions with varying modelling decisions. We derived a cohort of patients eligible for cardiovascular risk prediction from the Clinical Practice Research Datalink (CPRD) with linked hospitalisation and mortality records (N = 3,792,474). Risk prediction models were developed using the methods reported for QRISK2 and 3, before adjusting for additional risk factors, a secular trend, geographical variation in risk and the method for imputing missing data when generating a risk score (model A-model F). Ten-year risk scores were compared across the different models alongside model performance metrics. We found substantial variation in risk on the individual level across the models. The 95 percentile range of risks in model F for patients with risks between 9 and 10% according to model A was 4.4-16.3% and 4.6-15.8% for females and males respectively. Despite this, the models were difficult to distinguish using common performance metrics (Harrell's C ranged from 0.86 to 0.87). The largest contributing factor to variation in risk was adjusting for a secular trend (HR per calendar year, 0.96 [0.95-0.96] and 0.96 [0.96-0.96]). When extrapolating to the UK population, we found that 3.8 million patients may be reclassified as eligible for statin prescription depending on the model used. A key limitation of this study was that we could not assess the variation in risk that may be caused by risk factors missing from the database (such as diet or physical activity). Risk prediction models that use routinely collected data provide estimates strongly dependent on modelling decisions. Despite this large variability in patient risk, the models appear to perform similarly according to standard performance metrics. Decision-making should be supplemented with clinical judgement and evidence of additional risk factors. The largest source of variability, a secular trend in CVD incidence, can be accounted for and should be explored in more detail.
Sections du résumé
BACKGROUND
Risk prediction models are commonly used in practice to inform decisions on patients' treatment. Uncertainty around risk scores beyond the confidence interval is rarely explored. We conducted an uncertainty analysis of the QRISK prediction tool to evaluate the robustness of individual risk predictions with varying modelling decisions.
METHODS
We derived a cohort of patients eligible for cardiovascular risk prediction from the Clinical Practice Research Datalink (CPRD) with linked hospitalisation and mortality records (N = 3,792,474). Risk prediction models were developed using the methods reported for QRISK2 and 3, before adjusting for additional risk factors, a secular trend, geographical variation in risk and the method for imputing missing data when generating a risk score (model A-model F). Ten-year risk scores were compared across the different models alongside model performance metrics.
RESULTS
We found substantial variation in risk on the individual level across the models. The 95 percentile range of risks in model F for patients with risks between 9 and 10% according to model A was 4.4-16.3% and 4.6-15.8% for females and males respectively. Despite this, the models were difficult to distinguish using common performance metrics (Harrell's C ranged from 0.86 to 0.87). The largest contributing factor to variation in risk was adjusting for a secular trend (HR per calendar year, 0.96 [0.95-0.96] and 0.96 [0.96-0.96]). When extrapolating to the UK population, we found that 3.8 million patients may be reclassified as eligible for statin prescription depending on the model used. A key limitation of this study was that we could not assess the variation in risk that may be caused by risk factors missing from the database (such as diet or physical activity).
CONCLUSIONS
Risk prediction models that use routinely collected data provide estimates strongly dependent on modelling decisions. Despite this large variability in patient risk, the models appear to perform similarly according to standard performance metrics. Decision-making should be supplemented with clinical judgement and evidence of additional risk factors. The largest source of variability, a secular trend in CVD incidence, can be accounted for and should be explored in more detail.
Identifiants
pubmed: 31311543
doi: 10.1186/s12916-019-1368-8
pii: 10.1186/s12916-019-1368-8
pmc: PMC6636064
doi:
Substances chimiques
Hydroxymethylglutaryl-CoA Reductase Inhibitors
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
134Subventions
Organisme : Medical Research Council
ID : MR/N013751/1
Pays : United Kingdom
Commentaires et corrections
Type : ErratumIn
Références
Heart. 2012 Jul;98(14):1091-7
pubmed: 22689714
BMJ. 2012 Jan 25;344:d8059
pubmed: 22279113
PLoS One. 2014 Oct 01;9(10):e106455
pubmed: 25271417
Stat Med. 1999 Sep 15-30;18(17-18):2529-45
pubmed: 10474158
BMJ. 2018 Jun 13;361:k2396
pubmed: 29898951
Stat Med. 2005 Feb 15;24(3):479-89
pubmed: 15532086
Br J Gen Pract. 2013 Jun;63(611):e401-7
pubmed: 23735411
Biom J. 2006 Dec;48(6):1029-40
pubmed: 17240660
Open Heart. 2015 Aug 21;2(1):e000272
pubmed: 26322236
Stat Med. 2004 Mar 15;23(5):723-48
pubmed: 14981672
Stat Med. 2012 Oct 15;31(23):2644-59
pubmed: 22764064
BMJ. 2017 May 23;357:j2099
pubmed: 28536104
Int Stat Rev. 2017 Aug;85(2):185-203
pubmed: 29307954
Stat Med. 2002 Nov 15;21(21):3219-33
pubmed: 12375300
BMC Med Res Methodol. 2009 Jul 28;9:57
pubmed: 19638200
BMJ. 2001 Mar 31;322(7289):757-63
pubmed: 11282859
Curr Opin Psychiatry. 2016 Jan;29(1):13-7
pubmed: 26575295
BMC Med Res Methodol. 2017 Apr 18;17(1):60
pubmed: 28420338
Heart. 2016 Dec 15;102(24):1945-1952
pubmed: 27550425
Diagn Progn Res. 2018 Dec 18;2:23
pubmed: 31093570
Stat Med. 2011 May 10;30(10):1105-17
pubmed: 21484848
Int J Epidemiol. 2015 Jun;44(3):827-36
pubmed: 26050254
Stat Med. 1996 Feb 28;15(4):361-87
pubmed: 8668867
BMJ. 2010 May 13;340:c2442
pubmed: 20466793
J Am Med Inform Assoc. 2017 Jan;24(1):198-208
pubmed: 27189013
Stat Med. 2012 Oct 15;31(23):2627-43
pubmed: 21520455
BMJ Open. 2011 Jan 1;1(2):e000269
pubmed: 22021893
Heart. 2014 Apr;100 Suppl 2:ii1-ii67
pubmed: 24667225
Br J Sports Med. 2015 Aug;49(16):1069-76
pubmed: 24809696
Circulation. 2002 Mar 5;105(9):1135-43
pubmed: 11877368
BMJ. 2018 Sep 19;362:k3930
pubmed: 30232081
Trends Cardiovasc Med. 2017 Feb;27(2):123-133
pubmed: 27576060
BMJ. 2010 Dec 09;341:c6624
pubmed: 21148212
Heart. 2016 Dec 15;102(24):1939-1941
pubmed: 27619331
Stat Methods Med Res. 2017 Jun;26(3):1053-1077
pubmed: 25656552
JRSM Cardiovasc Dis. 2017 Jan 01;6:2048004016687211
pubmed: 28286646
Diagn Progn Res. 2017 Sep 26;1:15
pubmed: 31093544
BMJ. 2008 Jun 28;336(7659):1475-82
pubmed: 18573856