Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom.
Journal
Scientific data
ISSN: 2052-4463
Titre abrégé: Sci Data
Pays: England
ID NLM: 101640192
Informations de publication
Date de publication:
22 07 2019
22 07 2019
Historique:
received:
10
01
2019
accepted:
19
06
2019
entrez:
24
7
2019
pubmed:
25
7
2019
medline:
18
8
2020
Statut:
epublish
Résumé
Metagenomic and metatranscriptomic time-series data covering a 52-day period in the fall of 2016 provide an inventory of bacterial and archaeal community genes, transcripts, and taxonomy during an intense dinoflagellate bloom in Monterey Bay, CA, USA. The dataset comprises 84 metagenomes (0.8 terabases), 82 metatranscriptomes (1.1 terabases), and 88 16S rRNA amplicon libraries from samples collected on 41 dates. The dataset also includes 88 18S rRNA amplicon libraries, characterizing the taxonomy of the eukaryotic community during the bloom. Accompanying the sequence data are chemical and biological measurements associated with each sample. These datasets will facilitate studies of the structure and function of marine bacterial communities during episodic phytoplankton blooms.
Identifiants
pubmed: 31332186
doi: 10.1038/s41597-019-0132-4
pii: 10.1038/s41597-019-0132-4
pmc: PMC6646334
doi:
Types de publication
Dataset
Journal Article
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
129Subventions
Organisme : National Science Foundation (NSF)
ID : OCE-1342694
Pays : International
Organisme : National Science Foundation (NSF)
ID : OCE-1342699
Pays : International
Organisme : National Science Foundation (NSF)
ID : OCE-1342694
Pays : International
Références
Environ Microbiol. 2016 May;18(5):1403-14
pubmed: 26271760
Mol Ecol. 2010 Mar;19 Suppl 1:21-31
pubmed: 20331767
Nat Methods. 2016 Jul;13(7):581-3
pubmed: 27214047
Methods Enzymol. 2013;531:237-50
pubmed: 24060124
Science. 2015 Dec 11;350(6266):aac8455
pubmed: 26659059
Environ Microbiol. 2019 May;21(5):1687-1701
pubmed: 30761723
Nucleic Acids Res. 2013 Jan;41(Database issue):D590-6
pubmed: 23193283
Methods. 2016 Jun 1;102:3-11
pubmed: 27012178
J Comput Biol. 2012 May;19(5):455-77
pubmed: 22506599
Nucleic Acids Res. 2019 Jan 8;47(D1):D666-D677
pubmed: 30289528
ISME J. 2013 Feb;7(2):281-98
pubmed: 22931830
ISME J. 2013 Feb;7(2):237-43
pubmed: 22931831
Proc Natl Acad Sci U S A. 2014 Jul 29;111(30):11085-90
pubmed: 25024226
Appl Environ Microbiol. 2019 Feb 20;85(5):
pubmed: 30552195
Stand Genomic Sci. 2016 Feb 24;11:17
pubmed: 26918089
Bioinformatics. 2015 Sep 1;31(17):2885-7
pubmed: 25953801