Automated detection and classification of early AMD biomarkers using deep learning.


Journal

Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288

Informations de publication

Date de publication:
29 07 2019
Historique:
received: 11 01 2019
accepted: 21 06 2019
entrez: 31 7 2019
pubmed: 31 7 2019
medline: 27 10 2020
Statut: epublish

Résumé

Age-related macular degeneration (AMD) affects millions of people and is a leading cause of blindness throughout the world. Ideally, affected individuals would be identified at an early stage before late sequelae such as outer retinal atrophy or exudative neovascular membranes develop, which could produce irreversible visual loss. Early identification could allow patients to be staged and appropriate monitoring intervals to be established. Accurate staging of earlier AMD stages could also facilitate the development of new preventative therapeutics. However, accurate and precise staging of AMD, particularly using newer optical coherence tomography (OCT)-based biomarkers may be time-intensive and requires expert training which may not feasible in many circumstances, particularly in screening settings. In this work we develop deep learning method for automated detection and classification of early AMD OCT biomarker. Deep convolution neural networks (CNN) were explicitly trained for performing automated detection and classification of hyperreflective foci, hyporeflective foci within the drusen, and subretinal drusenoid deposits from OCT B-scans. Numerous experiments were conducted to evaluate the performance of several state-of-the-art CNNs and different transfer learning protocols on an image dataset containing approximately 20000 OCT B-scans from 153 patients. An overall accuracy of 87% for identifying the presence of early AMD biomarkers was achieved.

Identifiants

pubmed: 31358808
doi: 10.1038/s41598-019-47390-3
pii: 10.1038/s41598-019-47390-3
pmc: PMC6662691
doi:

Substances chimiques

Biomarkers 0

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

10990

Subventions

Organisme : NEI NIH HHS
ID : R21 EY030619
Pays : United States

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Auteurs

Sajib Saha (S)

Doheny Eye Institute, Los Angeles, CA, 90033, USA.
Australian e-Health Research Centre, CSIRO, Perth, Australia.

Marco Nassisi (M)

Doheny Eye Institute, Los Angeles, CA, 90033, USA.

Mo Wang (M)

Doheny Eye Institute, Los Angeles, CA, 90033, USA.

Sophiana Lindenberg (S)

Doheny Eye Institute, Los Angeles, CA, 90033, USA.

Yogi Kanagasingam (Y)

Australian e-Health Research Centre, CSIRO, Perth, Australia.

Srinivas Sadda (S)

Doheny Eye Institute, Los Angeles, CA, 90033, USA.
Dept. of Ophthalmology, David Geffen School of Medicine, The University of California, Los Angeles, CA, 90033, USA.

Zhihong Jewel Hu (ZJ)

Doheny Eye Institute, Los Angeles, CA, 90033, USA. jhu@doheny.org.

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