Plasticity in the Human Gut Microbiome Defies Evolutionary Constraints.

Animals Bacteria / classification Diet Evolution, Molecular Feces / microbiology Gastrointestinal Microbiome Genetic Variation Humans Life Style Phylogeny Primates / microbiology RNA, Ribosomal, 16S / genetics
evolution microbiome primate

Journal

mSphere
ISSN: 2379-5042
Titre abrégé: mSphere
Pays: United States
ID NLM: 101674533

Informations de publication

Date de publication:
31 07 2019
Historique:
entrez: 2 8 2019
pubmed: 2 8 2019
medline: 7 2 2020
Statut: epublish

Résumé

The gut microbiome of primates, including humans, is reported to closely follow host evolutionary history, with gut microbiome composition being specific to the genetic background of its primate host. However, the comparative models used to date have mainly included a limited set of closely related primates. To further understand the forces that shape the primate gut microbiome, with reference to human populations, we expanded the comparative analysis of variation among gut microbiome compositions and their primate hosts, including 9 different primate species and 4 human groups characterized by a diverse set of subsistence patterns (

Identifiants

DOI: 10.1128/mSphere.00271-19 PMID: 31366708 PMC: PMC6669335
pubmed: 31366708
pii: 4/4/e00271-19
doi: 10.1128/mSphere.00271-19
pmc: PMC6669335
pii:
doi:

Substances chimiques

RNA, Ribosomal, 16S 0

Types de publication

Comparative Study Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : NIGMS NIH HHS
ID : R35 GM128716
Pays : United States

Commentaires et corrections

Type : ErratumIn

Informations de copyright

Copyright © 2019 Gomez et al.

Références

Appl Environ Microbiol. 2019 May 2;85(10):
pubmed: 30504210
Curr Biol. 2015 Jun 29;25(13):1682-93
pubmed: 25981789
Microb Ecol. 2015 Feb;69(2):434-43
pubmed: 25524570
PLoS One. 2013 Apr 22;8(4):e61217
pubmed: 23630581
Mol Ecol. 2015 May;24(10):2551-65
pubmed: 25846719
Proc Natl Acad Sci U S A. 2016 Sep 13;113(37):10376-81
pubmed: 27573830
Compr Rev Food Sci Food Saf. 2009 Jul;8(3):181-194
pubmed: 33467798
Cell Rep. 2015 Apr 28;11(4):527-38
pubmed: 25892234
Nature. 2016 Jan 14;529(7585):212-5
pubmed: 26762459
Nat Commun. 2015 Mar 25;6:6505
pubmed: 25807110
Nature. 2002 Jan 24;415(6870):426-9
pubmed: 11807553
Cell Host Microbe. 2011 Oct 20;10(4):287-91
pubmed: 22018227
Science. 2008 Jun 20;320(5883):1647-51
pubmed: 18497261
Microbiome. 2015 Apr 16;3:16
pubmed: 25905018
PLoS Biol. 2010 Nov 16;8(11):e1000546
pubmed: 21103409
Cell Rep. 2016 Mar 8;14(9):2142-2153
pubmed: 26923597
Nature. 2012 May 09;486(7402):222-7
pubmed: 22699611
Philos Trans R Soc Lond B Biol Sci. 1991 Nov 29;334(1270):187-95; discussion 195-7
pubmed: 1685577
Microbiome. 2015 Nov 16;3:53
pubmed: 26568112
Am J Clin Nutr. 2010 Feb;91(2):295-7
pubmed: 20042522
Mol Ecol. 2018 Apr;27(8):1884-1897
pubmed: 29290090
Nutrition. 1999 Jun;15(6):488-98
pubmed: 10378206
Science. 2011 Oct 7;334(6052):105-8
pubmed: 21885731
Nat Commun. 2014 Apr 15;5:3654
pubmed: 24736369
Br J Nutr. 2012 Nov 14;108(9):1557-61
pubmed: 22264449
ISME J. 2016 Feb;10(2):514-26
pubmed: 26315972
Biol Lett. 2011 Dec 23;7(6):847-9
pubmed: 21632622
ISME J. 2019 Mar;13(3):576-587
pubmed: 29995839
Nutr Clin Pract. 2010 Dec;25(6):594-602
pubmed: 21139123
Proc Natl Acad Sci U S A. 2014 Nov 18;111(46):16431-5
pubmed: 25368157
Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14691-6
pubmed: 20679230
J Hum Evol. 2005 Mar;48(3):237-57
pubmed: 15737392
Nat Commun. 2015 Apr 28;6:6342
pubmed: 25919227
Am J Clin Nutr. 2005 Feb;81(2):341-54
pubmed: 15699220
Science. 2017 Aug 25;357(6353):802-806
pubmed: 28839072
Science. 2016 Jul 22;353(6297):380-2
pubmed: 27463672
Microbiome. 2017 Jun 8;5(1):60
pubmed: 28595639
mSphere. 2018 Aug 29;3(4):
pubmed: 30158281
Genome Biol. 2019 Jan 22;20(1):16
pubmed: 30665461
Nat Methods. 2010 May;7(5):335-6
pubmed: 20383131
Genome Res. 2009 Dec;19(12):2317-23
pubmed: 19819907
Am J Phys Anthropol. 2014 Jul;154(3):365-75
pubmed: 24740687
Br J Nutr. 2015 Jan 14;113(1):125-33
pubmed: 25418803
Bioinformatics. 2004 Jan 22;20(2):289-90
pubmed: 14734327
Nucleic Acids Res. 1994 Nov 11;22(22):4673-80
pubmed: 7984417
Trends Endocrinol Metab. 2016 May;27(5):239-242
pubmed: 27079516
Am J Phys Anthropol. 2009 Dec;140(4):727-38
pubmed: 19890869
Cell. 2018 Nov 1;175(4):962-972.e10
pubmed: 30388453

Auteurs

Andres Gomez (A)

Department of Animal Science, University of Minnesota, Twin Cities, St. Paul, Minnesota, USA gomeza@umn.edu.
ORCID: 0000-0002-1174-0368

Ashok Kumar Sharma (AK)

Department of Animal Science, University of Minnesota, Twin Cities, St. Paul, Minnesota, USA.

Elizabeth K Mallott (EK)

Department of Anthropology, Northwestern University, Evanston, Illinois, USA.
ORCID: 0000-0001-5446-8563

Klara J Petrzelkova (KJ)

Institute of Vertebrate Biology, The Czech Academy of Sciences, Brno, Czech Republic.
Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, Ceske Budejovice, Czech Republic.
Liberec Zoo, Liberec, Czech Republic.

Carolyn A Jost Robinson (CA)

Department of Anthropology, University of North Carolina, Wilmington, North Carolina, USA.

Carl J Yeoman (CJ)

Department of Animal and Range Sciences, Montana State University, Bozeman, Montana, USA.

Franck Carbonero (F)

Department of Nutrition & Exercise Physiology, Elson S. Floyd College of Medicine, Washington State University, Spokane, Washington, USA.

Barbora Pafco (B)

Institute of Vertebrate Biology, The Czech Academy of Sciences, Brno, Czech Republic.
Department of Pathology and Parasitology, Faculty of Veterinary Medicine, University of Veterinary and Pharmaceutical Sciences Brno, Brno, Czech Republic.

Jessica M Rothman (JM)

Department of Anthropology, Hunter College of CUNY and New York Consortium in Evolutionary Primatology (NYCEP), New York, New York, USA.

Alexander Ulanov (A)

Metabolomics Center, Roy J. Carver Biotechnology Center, University of Illinois at Urbana-Champaign, Champaign, Illinois, USA.

Klara Vlckova (K)

Institute of Vertebrate Biology, The Czech Academy of Sciences, Brno, Czech Republic.
Department of Pathology and Parasitology, Faculty of Veterinary Medicine, University of Veterinary and Pharmaceutical Sciences Brno, Brno, Czech Republic.

Katherine R Amato (KR)

Department of Anthropology, Northwestern University, Evanston, Illinois, USA.

Stephanie L Schnorr (SL)

Department of Anthropology, University of Nevada, Las Vegas, Nevada, USA.
Konrad Lorenz Institute for Evolution and Cognition Research, Klosterneuburg, Austria.
ORCID: 0000-0002-3742-0565

Nathaniel J Dominy (NJ)

Department of Anthropology, Dartmouth College, Hanover, New Hampshire, USA.

David Modry (D)

Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, Ceske Budejovice, Czech Republic.
Department of Pathology and Parasitology, Faculty of Veterinary Medicine, University of Veterinary and Pharmaceutical Sciences Brno, Brno, Czech Republic.
Central European Institute for Technology (CEITEC), University of Veterinary and Pharmaceutical Sciences Brno, Brno, Czech Republic.

Angelique Todd (A)

World Wildlife Fund, Dzanga-Sangha Protected Areas, Bayanga, Central African Republic.

Manolito Torralba (M)

J. Craig Venter Institute, La Jolla, California, USA.

Karen E Nelson (KE)

J. Craig Venter Institute, La Jolla, California, USA.

Michael B Burns (MB)

Department of Biology, Loyola University Chicago, Chicago, Illinois, USA.

Ran Blekhman (R)

Department of Genetics, Cell Biology, and Development, University of Minnesota, Twin Cities, Minneapolis, Minnesota, USA.

Melissa Remis (M)

Department of Anthropology, Purdue University, West Lafayette, Indiana, USA.

Rebecca M Stumpf (RM)

Carl Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Champaign, Illinois, USA.
Department of Anthropology, University of Illinois at Urbana-Champaign, Champaign, Illinois, USA.

Brenda A Wilson (BA)

Carl Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Champaign, Illinois, USA.
Department of Microbiology, University of Illinois at Urbana-Champaign, Champaign, Illinois, USA.

H Rex Gaskins (HR)

Carl Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Champaign, Illinois, USA.
Department of Animal Sciences, University of Illinois at Urbana-Champaign, Champaign, Illinois, USA.

Paul A Garber (PA)

Department of Anthropology, University of Illinois at Urbana-Champaign, Champaign, Illinois, USA.

Bryan A White (BA)

Carl Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Champaign, Illinois, USA.
Department of Animal Sciences, University of Illinois at Urbana-Champaign, Champaign, Illinois, USA.

Steven R Leigh (SR)

Department of Anthropology, University of Colorado, Boulder, Colorado, USA.

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Classifications MeSH

questionsmedicales.fr › Eucaryotes › Animaux › Plasticity in the Human Gut Microbiome Defies...
questionsmedicales.fr › Bactéries › Plasticity in the Human Gut Microbiome Defies...
questionsmedicales.fr › Phénomènes physiologiques › Alimentation et nutrition › Phénomènes physiologiques nutritionnels › Régime alimentaire › Plasticity in the Human Gut Microbiome Defies...
questionsmedicales.fr › Phénomènes biologiques › Évolution biologique › Évolution moléculaire › Plasticity in the Human Gut Microbiome Defies...
questionsmedicales.fr › Liquides et sécrétions biologiques › Fèces › Plasticity in the Human Gut Microbiome Defies...
questionsmedicales.fr › Environnement et santé publique › Environnement › Écosystème › Biodiversité › Biote › Microbiote › Microbiome gastro-intestinal › Plasticity in the Human Gut Microbiome Defies...
questionsmedicales.fr › Phénomènes génétiques › Variation génétique › Plasticity in the Human Gut Microbiome Defies...
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Mammifères › Eutheria › Primates › Haplorhini › Catarrhini › Hominidae › Humains › Plasticity in the Human Gut Microbiome Defies...
questionsmedicales.fr › Comportement et mécanismes comportementaux › Mode de vie › Plasticity in the Human Gut Microbiome Defies...
questionsmedicales.fr › Sciences de l'information › Phylogenèse › Plasticity in the Human Gut Microbiome Defies...
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Mammifères › Eutheria › Primates › Plasticity in the Human Gut Microbiome Defies...
questionsmedicales.fr › Acides nucléiques, nucléotides et nucléosides › Acides nucléiques › ARN › ARN ribosomique › ARN ribosomique 16S › Plasticity in the Human Gut Microbiome Defies...