CANPA: Computer-Assisted Natural Products Anticipation.


Journal

Analytical chemistry
ISSN: 1520-6882
Titre abrégé: Anal Chem
Pays: United States
ID NLM: 0370536

Informations de publication

Date de publication:
03 09 2019
Historique:
pubmed: 2 8 2019
medline: 23 9 2020
entrez: 2 8 2019
Statut: ppublish

Résumé

Traditional natural products discovery workflows implying a combination of different targeting strategies, including structure- and/or bioactivity-based approaches, afford no information about new compound structures until late in the discovery pipeline. By integrating a MS/MS prediction module and a collaborative library of (bio)chemical transformations, we have developed a new platform, coined MetWork, that is capable of anticipating the structural identity of metabolites starting from any identified compound. In our quest to discover new monoterpene indole alkaloids, we demonstrate the utility of the MetWork platform by anticipating the structures of five previously undescribed sarpagine-like

Identifiants

pubmed: 31369240
doi: 10.1021/acs.analchem.9b02216
doi:

Substances chimiques

Alkaloids 0
Biological Products 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

11247-11252

Auteurs

Alexander E Fox Ramos (AE)

Équipe "Pharmacognosie-chimie des substances naturelles" BioCIS, Univ. Paris-Sud, CNRS, Université Paris-Saclay , 5 rue J.-B. Clément , 92290 Châtenay-Malabry , France.

Coralie Pavesi (C)

Équipe "Pharmacognosie-chimie des substances naturelles" BioCIS, Univ. Paris-Sud, CNRS, Université Paris-Saclay , 5 rue J.-B. Clément , 92290 Châtenay-Malabry , France.

Marc Litaudon (M)

Institut de Chimie des Substances Naturelles, CNRS, ICSN UPR 2301, Université Paris-Saclay , 21 avenue de la Terrasse , 91198 , Gif-sur-Yvette , France.

Vincent Dumontet (V)

Institut de Chimie des Substances Naturelles, CNRS, ICSN UPR 2301, Université Paris-Saclay , 21 avenue de la Terrasse , 91198 , Gif-sur-Yvette , France.

Erwan Poupon (E)

Équipe "Pharmacognosie-chimie des substances naturelles" BioCIS, Univ. Paris-Sud, CNRS, Université Paris-Saclay , 5 rue J.-B. Clément , 92290 Châtenay-Malabry , France.

Pierre Champy (P)

Équipe "Pharmacognosie-chimie des substances naturelles" BioCIS, Univ. Paris-Sud, CNRS, Université Paris-Saclay , 5 rue J.-B. Clément , 92290 Châtenay-Malabry , France.

Grégory Genta-Jouve (G)

C-TAC UMR CNRS 8038 CiTCoM, Faculté de Pharmacie de Paris, Université Paris Descartes , 4 avenue de l'Observatoire , 75006 Paris , France.
Muséum National d'Histoire Naturelle, Unité Molécules de Communication et Adaptation des Micro-organismes (UMR 7245) , Sorbonne Universités, CNRS , 75006 Paris , France.

Mehdi A Beniddir (MA)

Équipe "Pharmacognosie-chimie des substances naturelles" BioCIS, Univ. Paris-Sud, CNRS, Université Paris-Saclay , 5 rue J.-B. Clément , 92290 Châtenay-Malabry , France.

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Classifications MeSH