PlatformTM, a standards-based data custodianship platform for translational medicine research.
Journal
Scientific data
ISSN: 2052-4463
Titre abrégé: Sci Data
Pays: England
ID NLM: 101640192
Informations de publication
Date de publication:
13 08 2019
13 08 2019
Historique:
received:
23
10
2018
accepted:
25
07
2019
entrez:
15
8
2019
pubmed:
15
8
2019
medline:
21
8
2020
Statut:
epublish
Résumé
Biomedical informatics has traditionally adopted a linear view of the informatics process (collect, store and analyse) in translational medicine (TM) studies; focusing primarily on the challenges in data integration and analysis. However, a data management challenge presents itself with the new lifecycle view of data emphasized by the recent calls for data re-use, long term data preservation, and data sharing. There is currently a lack of dedicated infrastructure focused on the 'manageability' of the data lifecycle in TM research between data collection and analysis. Current community efforts towards establishing a culture for open science prompt the creation of a data custodianship environment for management of TM data assets to support data reuse and reproducibility of research results. Here we present the development of a lifecycle-based methodology to create a metadata management framework based on community driven standards for standardisation, consolidation and integration of TM research data. Based on this framework, we also present the development of a new platform (PlatformTM) focused on managing the lifecycle for translational research data assets.
Identifiants
pubmed: 31409798
doi: 10.1038/s41597-019-0156-9
pii: 10.1038/s41597-019-0156-9
pmc: PMC6692384
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
149Subventions
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/I000771/1
Pays : United Kingdom
Organisme : Innovative Medicines Initiative (IMI)
ID : 115446 & 115308
Pays : International
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/E025080/1
Pays : United Kingdom
Organisme : Innovative Medicines Initiative (IMI)
ID : 115446
Pays : International
Organisme : Innovative Medicines Initiative (IMI)
ID : 115308
Pays : International
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