The ABCD database: a repository for chemically defined antibodies.

Amino Acid Sequence Antibodies / chemistry Antigens / chemistry Databases, Protein

Journal

Nucleic acids research
ISSN: 1362-4962
Titre abrégé: Nucleic Acids Res
Pays: England
ID NLM: 0411011

Informations de publication

Date de publication:
08 01 2020
Historique:
accepted: 05 08 2019
revised: 01 08 2019
received: 19 06 2019
pubmed: 15 8 2019
medline: 26 5 2020
entrez: 15 8 2019
Statut: ppublish

Résumé

The ABCD (for AntiBodies Chemically Defined) database is a repository of sequenced antibodies, integrating curated information about the antibody and its antigen with cross-links to standardized databases of chemical and protein entities. It is freely available to the academic community, accessible through the ExPASy server (https://web.expasy.org/abcd/). The ABCD database aims at helping to improve reproducibility in academic research by providing a unique, unambiguous identifier associated to each antibody sequence. It also allows to determine rapidly if a sequenced antibody is available for a given antigen.

Identifiants

DOI: 10.1093/nar/gkz714 PMID: 31410491 PMC: PMC6943046
pubmed: 31410491
pii: 5549708
doi: 10.1093/nar/gkz714
pmc: PMC6943046
doi:

Substances chimiques

Antibodies 0
Antigens 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

D261-D264

Informations de copyright

© The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research.

Références

Nucleic Acids Res. 2015 Jan;43(Database issue):D413-22
pubmed: 25378316
Mol Cell Proteomics. 2008 Oct;7(10):2028-37
pubmed: 18667413
Chimia (Aarau). 2016 Dec 21;70(12):893-897
pubmed: 28661364
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D671-4
pubmed: 15608286
Nucleic Acids Res. 2000 Jan 1;28(1):235-42
pubmed: 10592235
Nucleic Acids Res. 2012 Jan;40(Database issue):D1230-4
pubmed: 22080506
Nucleic Acids Res. 2017 Jan 4;45(D1):D158-D169
pubmed: 27899622
Genome Biol. 2007;8(11):R254
pubmed: 18047641
Nucleic Acids Res. 2019 Jan 8;47(D1):D23-D28
pubmed: 30395293
Anal Chem Insights. 2016 Mar 20;11:21-7
pubmed: 27013861
Nature. 2015 May 21;521(7552):274-6
pubmed: 25993940
Nat Methods. 2016 Oct;13(10):823-7
pubmed: 27595404
Mol Cell Proteomics. 2015 Oct;14(10):2833-47
pubmed: 26290498
Nucleic Acids Res. 2016 Jan 4;44(D1):D1214-9
pubmed: 26467479
Mol Cell Proteomics. 2015 Feb;14(2):382-98
pubmed: 25512614
J Biomol Tech. 2018 Jul;29(2):25-38
pubmed: 29805321
Nucleic Acids Res. 2013 Jan;41(Database issue):D344-7
pubmed: 23161676
Nucleic Acids Res. 2019 Jan 8;47(D1):D351-D360
pubmed: 30398656
Nucleic Acids Res. 2015 Jan;43(Database issue):D1152-7
pubmed: 25392412
Proc Natl Acad Sci U S A. 2017 Jan 31;114(5):944-949
pubmed: 28096333
Nature. 2015 Feb 5;518(7537):27-9
pubmed: 25652980
J Mol Biol. 2017 Feb 3;429(3):356-364
pubmed: 27561707
Elife. 2019 Jan 22;8:
pubmed: 30667360

Auteurs

Wanessa C Lima (WC)

Geneva Antibody Facility, Faculty of Medicine, University of Geneva, CH-1211 Geneva, Switzerland.

Elisabeth Gasteiger (E)

Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CH-1211 Geneva, Switzerland.

Paolo Marcatili (P)

Department of Bio and Health Informatics, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark.

Paula Duek (P)

CALIPHO Group, Faculty of Medicine, University of Geneva and SIB Swiss Institute of Bioinformatics, CH-1211 Geneva, Switzerland.

Amos Bairoch (A)

CALIPHO Group, Faculty of Medicine, University of Geneva and SIB Swiss Institute of Bioinformatics, CH-1211 Geneva, Switzerland.

Pierre Cosson (P)

Geneva Antibody Facility, Faculty of Medicine, University of Geneva, CH-1211 Geneva, Switzerland.

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Classifications MeSH

questionsmedicales.fr › Sciences de l'information › Sources d'information › Services d'information › Documentation › Données de séquences moléculaires › Séquence d'acides aminés › The ABCD database: a repository for chemically...
questionsmedicales.fr › Acides aminés, peptides et protéines › Protéines › Globulines › Sérum-globulines › Immunoglobulines › Anticorps › The ABCD database: a repository for chemically...
questionsmedicales.fr › Facteurs biologiques › Antigènes › The ABCD database: a repository for chemically...
questionsmedicales.fr › Sciences de l'information › Mémorisation et recherche des informations › Bases de données comme sujet › Bases de données factuelles › Bases de données génétiques › Bases de données de protéines › The ABCD database: a repository for chemically...