A plasma proteogenomic signature for fibromuscular dysplasia.
Adaptor Proteins, Signal Transducing
/ blood
Adult
Aged
Blood Proteins
/ genetics
Case-Control Studies
Cytoskeletal Proteins
/ blood
Female
Fibromuscular Dysplasia
/ blood
Genetic Markers
Genetic Predisposition to Disease
High-Throughput Screening Assays
Humans
Lipids
/ blood
Machine Learning
Middle Aged
Phenotype
Predictive Value of Tests
Proof of Concept Study
Proteogenomics
Reproducibility of Results
Systems Biology
Young Adult
CD2AP
Fibromuscular dysplasia
Plasma protein
Proteomics
Journal
Cardiovascular research
ISSN: 1755-3245
Titre abrégé: Cardiovasc Res
Pays: England
ID NLM: 0077427
Informations de publication
Date de publication:
01 01 2020
01 01 2020
Historique:
received:
18
07
2019
revised:
02
08
2019
accepted:
15
08
2019
pubmed:
20
8
2019
medline:
26
8
2020
entrez:
20
8
2019
Statut:
ppublish
Résumé
Fibromuscular dysplasia (FMD) is a poorly understood disease that predominantly affects women during middle-life, with features that include stenosis, aneurysm, and dissection of medium-large arteries. Recently, plasma proteomics has emerged as an important means to understand cardiovascular diseases. Our objectives were: (i) to characterize plasma proteins and determine if any exhibit differential abundance in FMD subjects vs. matched healthy controls and (ii) to leverage these protein data to conduct systems analyses to provide biologic insights on FMD, and explore if this could be developed into a blood-based FMD test. Females with 'multifocal' FMD and matched healthy controls underwent clinical phenotyping, dermal biopsy, and blood draw. Using dual-capture proximity extension assay and nuclear magnetic resonance-spectroscopy, we evaluated plasma levels of 981 proteins and 31 lipid sub-classes, respectively. In a discovery cohort (Ncases = 90, Ncontrols = 100), we identified 105 proteins and 16 lipid sub-classes (predominantly triglycerides and fatty acids) with differential plasma abundance in FMD cases vs. controls. In an independent cohort (Ncases = 23, Ncontrols = 28), we successfully validated 37 plasma proteins and 10 lipid sub-classes with differential abundance. Among these, 5/37 proteins exhibited genetic control and Bayesian analyses identified 3 of these as potential upstream drivers of FMD. In a 3rd cohort (Ncases = 506, Ncontrols = 876) the genetic locus of one of these upstream disease drivers, CD2-associated protein (CD2AP), was independently validated as being associated with risk of having FMD (odds ratios = 1.36; P = 0.0003). Immune-fluorescence staining identified that CD2AP is expressed by the endothelium of medium-large arteries. Finally, machine learning trained on the discovery cohort was used to develop a test for FMD. When independently applied to the validation cohort, the test showed a c-statistic of 0.73 and sensitivity of 78.3%. FMD exhibits a plasma proteogenomic and lipid signature that includes potential causative disease drivers, and which holds promise for developing a blood-based test for this disease.
Identifiants
pubmed: 31424497
pii: 5551328
doi: 10.1093/cvr/cvz219
pmc: PMC6918065
doi:
Substances chimiques
Adaptor Proteins, Signal Transducing
0
Blood Proteins
0
CD2-associated protein
0
Cytoskeletal Proteins
0
Genetic Markers
0
Lipids
0
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Validation Study
Langues
eng
Sous-ensembles de citation
IM
Pagination
63-77Subventions
Organisme : NHLBI NIH HHS
ID : R01 HL125863
Pays : United States
Organisme : British Heart Foundation
ID : PG/17/48/32956
Pays : United Kingdom
Organisme : NHLBI NIH HHS
ID : R01 HL130423
Pays : United States
Organisme : British Heart Foundation
ID : RG/16/14/32397
Pays : United Kingdom
Organisme : NHLBI NIH HHS
ID : T32 HL007824
Pays : United States
Organisme : British Heart Foundation
ID : CH/16/3/32406
Pays : United Kingdom
Organisme : NHLBI NIH HHS
ID : R01 HL135093
Pays : United States
Commentaires et corrections
Type : CommentIn
Informations de copyright
Published on behalf of the European Society of Cardiology. All rights reserved. © The Author(s) 2019. For permissions, please email: journals.permissions@oup.com.
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