A plasma proteogenomic signature for fibromuscular dysplasia.


Journal

Cardiovascular research
ISSN: 1755-3245
Titre abrégé: Cardiovasc Res
Pays: England
ID NLM: 0077427

Informations de publication

Date de publication:
01 01 2020
Historique:
received: 18 07 2019
revised: 02 08 2019
accepted: 15 08 2019
pubmed: 20 8 2019
medline: 26 8 2020
entrez: 20 8 2019
Statut: ppublish

Résumé

Fibromuscular dysplasia (FMD) is a poorly understood disease that predominantly affects women during middle-life, with features that include stenosis, aneurysm, and dissection of medium-large arteries. Recently, plasma proteomics has emerged as an important means to understand cardiovascular diseases. Our objectives were: (i) to characterize plasma proteins and determine if any exhibit differential abundance in FMD subjects vs. matched healthy controls and (ii) to leverage these protein data to conduct systems analyses to provide biologic insights on FMD, and explore if this could be developed into a blood-based FMD test. Females with 'multifocal' FMD and matched healthy controls underwent clinical phenotyping, dermal biopsy, and blood draw. Using dual-capture proximity extension assay and nuclear magnetic resonance-spectroscopy, we evaluated plasma levels of 981 proteins and 31 lipid sub-classes, respectively. In a discovery cohort (Ncases = 90, Ncontrols = 100), we identified 105 proteins and 16 lipid sub-classes (predominantly triglycerides and fatty acids) with differential plasma abundance in FMD cases vs. controls. In an independent cohort (Ncases = 23, Ncontrols = 28), we successfully validated 37 plasma proteins and 10 lipid sub-classes with differential abundance. Among these, 5/37 proteins exhibited genetic control and Bayesian analyses identified 3 of these as potential upstream drivers of FMD. In a 3rd cohort (Ncases = 506, Ncontrols = 876) the genetic locus of one of these upstream disease drivers, CD2-associated protein (CD2AP), was independently validated as being associated with risk of having FMD (odds ratios  = 1.36; P = 0.0003). Immune-fluorescence staining identified that CD2AP is expressed by the endothelium of medium-large arteries. Finally, machine learning trained on the discovery cohort was used to develop a test for FMD. When independently applied to the validation cohort, the test showed a c-statistic of 0.73 and sensitivity of 78.3%. FMD exhibits a plasma proteogenomic and lipid signature that includes potential causative disease drivers, and which holds promise for developing a blood-based test for this disease.

Identifiants

pubmed: 31424497
pii: 5551328
doi: 10.1093/cvr/cvz219
pmc: PMC6918065
doi:

Substances chimiques

Adaptor Proteins, Signal Transducing 0
Blood Proteins 0
CD2-associated protein 0
Cytoskeletal Proteins 0
Genetic Markers 0
Lipids 0

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Validation Study

Langues

eng

Sous-ensembles de citation

IM

Pagination

63-77

Subventions

Organisme : NHLBI NIH HHS
ID : R01 HL125863
Pays : United States
Organisme : British Heart Foundation
ID : PG/17/48/32956
Pays : United Kingdom
Organisme : NHLBI NIH HHS
ID : R01 HL130423
Pays : United States
Organisme : British Heart Foundation
ID : RG/16/14/32397
Pays : United Kingdom
Organisme : NHLBI NIH HHS
ID : T32 HL007824
Pays : United States
Organisme : British Heart Foundation
ID : CH/16/3/32406
Pays : United Kingdom
Organisme : NHLBI NIH HHS
ID : R01 HL135093
Pays : United States

Commentaires et corrections

Type : CommentIn

Informations de copyright

Published on behalf of the European Society of Cardiology. All rights reserved. © The Author(s) 2019. For permissions, please email: journals.permissions@oup.com.

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Auteurs

Jeffrey W Olin (JW)

The Zena and Michael A. Wiener Cardiovascular Institute, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1030, New York, NY 10029, USA.

Antonio F Di Narzo (AF)

Department of Genetics & Genomic Sciences, Institute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

Valentina d'Escamard (V)

The Zena and Michael A. Wiener Cardiovascular Institute, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1030, New York, NY 10029, USA.

Daniella Kadian-Dodov (D)

The Zena and Michael A. Wiener Cardiovascular Institute, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1030, New York, NY 10029, USA.

Haoxiang Cheng (H)

Department of Genetics & Genomic Sciences, Institute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

Adrien Georges (A)

INSERM, UMR970 Paris Cardiovascular Research Center (PARCC), Paris, France.
Paris-Descartes University, Sorbonne Paris Cité, Paris 75006, France.

Annette King (A)

The Zena and Michael A. Wiener Cardiovascular Institute, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1030, New York, NY 10029, USA.

Allison Thomas (A)

The Zena and Michael A. Wiener Cardiovascular Institute, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1030, New York, NY 10029, USA.

Temo Barwari (T)

King's British Heart Foundation Centre, King's College London, London, UK.

Katherine C Michelis (KC)

The Zena and Michael A. Wiener Cardiovascular Institute, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1030, New York, NY 10029, USA.

Rihab Bouchareb (R)

The Zena and Michael A. Wiener Cardiovascular Institute, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1030, New York, NY 10029, USA.

Emir Bander (E)

The Zena and Michael A. Wiener Cardiovascular Institute, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1030, New York, NY 10029, USA.

Anelechi Anyanwu (A)

Department of Cardiovascular Surgery, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

Paul Stelzer (P)

Department of Cardiovascular Surgery, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

Farzan Filsoufi (F)

Department of Cardiovascular Surgery, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

Sander Florman (S)

Recanati-Miller Transplantation Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

Mete Civelek (M)

Department of Biomedical Engineering, University of Virginia, Charlottesville, VA, USA.

Stephanie Debette (S)

Bordeaux Population Health Research Centre, INSERM U1219, University of Bordeaux, Bordeaux, France.
Memory Clinic, Department of Neurology and Institute for Neurodegenerative Diseases, CHU de Bordeaux, Bordeaux, France.

Xavier Jeunemaitre (X)

INSERM, UMR970 Paris Cardiovascular Research Center (PARCC), Paris, France.
Paris-Descartes University, Sorbonne Paris Cité, Paris 75006, France.
Assistance Publique-Hôpital De Paris, Department of Genetics and Referral Center for Rare Vascular Diseases, Hôpital Européen Georges Pompidou, Paris, F-75015, France.

Johan L M Björkegren (JLM)

Department of Genetics & Genomic Sciences, Institute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Integrated Cardio Metabolic Centre, Department of Medicine, Karolinska Institutet, Karolinska Universitetssjukhuset, Huddinge, Sweden.

Manuel Mayr (M)

The Zena and Michael A. Wiener Cardiovascular Institute, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1030, New York, NY 10029, USA.
King's British Heart Foundation Centre, King's College London, London, UK.

Nabila Bouatia-Naji (N)

INSERM, UMR970 Paris Cardiovascular Research Center (PARCC), Paris, France.
Paris-Descartes University, Sorbonne Paris Cité, Paris 75006, France.

Ke Hao (K)

Department of Genetics & Genomic Sciences, Institute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

Jason C Kovacic (JC)

The Zena and Michael A. Wiener Cardiovascular Institute, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1030, New York, NY 10029, USA.

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Classifications MeSH