A phylogenomic framework for pelagiarian fishes (Acanthomorpha: Percomorpha) highlights mosaic radiation in the open ocean.
UCE
adaptive radiation
pelagic realm
speciation
ultraconserved elements
Journal
Proceedings. Biological sciences
ISSN: 1471-2954
Titre abrégé: Proc Biol Sci
Pays: England
ID NLM: 101245157
Informations de publication
Date de publication:
11 09 2019
11 09 2019
Historique:
entrez:
12
9
2019
pubmed:
12
9
2019
medline:
4
6
2020
Statut:
ppublish
Résumé
The fish clade Pelagiaria, which includes tunas as its most famous members, evolved remarkable morphological and ecological variety in a setting not generally considered conducive to diversification: the open ocean. Relationships within Pelagiaria have proven elusive due to short internodes subtending major lineages suggestive of rapid early divergences. Using a novel sequence dataset of over 1000 ultraconserved DNA elements (UCEs) for 94 of the 286 species of Pelagiaria (more than 70% of genera), we provide a time-calibrated phylogeny for this widely distributed clade. Some inferred relationships have clear precedents (e.g. the monophyly of 'core' Stromateoidei, and a clade comprising 'Gempylidae' and Trichiuridae), but others are unexpected despite strong support (e.g. Chiasmodontidae +
Identifiants
pubmed: 31506051
doi: 10.1098/rspb.2019.1502
pmc: PMC6742994
doi:
Banques de données
Dryad
['10.5061/dryad.sq067ng']
figshare
['10.6084/m9.figshare.c.4643453']
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
20191502Références
Syst Biol. 2019 May 1;68(3):538-550
pubmed: 30481343
PLoS One. 2014 Nov 19;9(11):e112732
pubmed: 25409027
BMC Evol Biol. 2016 Oct 21;16(1):224
pubmed: 27769164
Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20520-5
pubmed: 23184976
J Morphol. 1978 Dec;158(3):323-360
pubmed: 30227701
PLoS One. 2013 Sep 04;8(9):e73535
pubmed: 24023883
Nature. 2018 Jul;559(7714):392-395
pubmed: 29973726
Mol Phylogenet Evol. 2018 Jul;124:172-180
pubmed: 29526805
Biol Lett. 2009 Apr 23;5(2):235-9
pubmed: 19158027
PLoS One. 2014 Feb 26;9(2):e89543
pubmed: 24586858
Mol Ecol. 2001 Mar;10(3):793-806
pubmed: 11298988
Nat Ecol Evol. 2018 Apr;2(4):688-696
pubmed: 29531346
Evolution. 2010 Aug;64(8):2385-96
pubmed: 20455932
Nat Commun. 2013;4:1958
pubmed: 23739623
Bioinformatics. 2014 Sep 1;30(17):i541-8
pubmed: 25161245
Proc Biol Sci. 2018 Dec 19;285(1893):20182010
pubmed: 30963906
J Fish Biol. 2012 Nov;81(6):2030-9
pubmed: 23130696
Proc Biol Sci. 2019 Mar 27;286(1899):20182325
pubmed: 30890095
Mol Ecol. 2008 Oct;17(19):4233-47
pubmed: 19378403
Science. 1993 Apr 9;260(5105):210-4
pubmed: 8469974
Evolution. 2015 Jun;69(6):1528-1545
pubmed: 25958922
Evolution. 2019 Mar;73(3):524-539
pubmed: 30690704
Bioinformatics. 2014 Aug 1;30(15):2216-8
pubmed: 24728855
Science. 2003 Aug 15;301(5635):961-4
pubmed: 12920297
Proc Biol Sci. 2010 Jun 7;277(1688):1675-83
pubmed: 20133356
Proc Natl Acad Sci U S A. 2018 Jun 12;115(24):6249-6254
pubmed: 29760103
Proc Natl Acad Sci U S A. 2009 Mar 31;106(13):5218-23
pubmed: 19276106
Mol Biol Evol. 2007 Aug;24(8):1586-91
pubmed: 17483113
Mol Biol Evol. 2012 Aug;29(8):1969-73
pubmed: 22367748
Proc Natl Acad Sci U S A. 2013 Jul 30;110(31):12738-43
pubmed: 23858462
Mar Biol. 2014;161(5):1139-1148
pubmed: 24771948
Bioinformatics. 2010 Nov 15;26(22):2910-1
pubmed: 20861028
Evolution. 2019 Feb;73(2):346-359
pubmed: 30592533
J Evol Biol. 2011 Dec;24(12):2543-62
pubmed: 21985176
Proc Biol Sci. 2016 May 25;283(1831):
pubmed: 27194702
Cladistics. 1985 Mar;1(2):141-158
pubmed: 34965672
Mol Phylogenet Evol. 2016 Jan;94(Pt B):565-576
pubmed: 26493227
Proc Natl Acad Sci U S A. 2015 Jul 14;112(28):8537-42
pubmed: 26124114
Ecol Lett. 2009 Aug;12(8):735-43
pubmed: 19558515
Proc Biol Sci. 2018 Oct 10;285(1888):
pubmed: 30305432
Evolution. 2013 May;67(5):1321-37
pubmed: 23617911
Curr Biol. 2017 Jun 5;27(11):R550-R557
pubmed: 28586692
Mol Biol Evol. 2007 Feb;24(2):412-26
pubmed: 17095535
PLoS Curr. 2013 Apr 18;5:
pubmed: 23653398