Extensive ribosome and RF2 rearrangements during translation termination.
E. coli
GGQ motif rearrangement
cell biology
ensemble cryo-EM
intersubunit rotation
molecular biophysics
release factor 2
ribosome recycling
structural biology
translation termination
Journal
eLife
ISSN: 2050-084X
Titre abrégé: Elife
Pays: England
ID NLM: 101579614
Informations de publication
Date de publication:
12 09 2019
12 09 2019
Historique:
received:
14
03
2019
accepted:
28
08
2019
entrez:
13
9
2019
pubmed:
13
9
2019
medline:
8
2
2020
Statut:
epublish
Résumé
Protein synthesis ends when a ribosome reaches an mRNA stop codon. Release factors (RFs) decode the stop codon, hydrolyze peptidyl-tRNA to release the nascent protein, and then dissociate to allow ribosome recycling. To visualize termination by RF2, we resolved a cryo-EM ensemble of
Identifiants
pubmed: 31513010
doi: 10.7554/eLife.46850
pii: 46850
pmc: PMC6742477
doi:
pii:
Substances chimiques
Escherichia coli Proteins
0
Peptide Termination Factors
0
prfB protein, E coli
0
Banques de données
PDB
['6OFX', '6OG7', '6OGF', '6OGI', '6OGG']
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : NIGMS NIH HHS
ID : R35 GM127094
Pays : United States
Organisme : NIGMS NIH HHS
ID : R01 GM107465
Pays : United States
Informations de copyright
© 2019, Svidritskiy et al.
Déclaration de conflit d'intérêts
ES, GD, AL, CX, AK No competing interests declared
Références
Structure. 2018 Jun 5;26(6):821-828.e3
pubmed: 29731232
Biochem Biophys Res Commun. 1967 Sep 7;28(5):773-8
pubmed: 6061555
J Struct Biol. 1996 Jan-Feb;116(1):71-6
pubmed: 8742726
Mol Cell. 2008 Jun 6;30(5):578-88
pubmed: 18538656
Biochem Cell Biol. 1995 Nov-Dec;73(11-12):1113-22
pubmed: 8722028
Biochemistry. 2016 Nov 15;55(45):6344-6354
pubmed: 27779391
Science. 2013 Jun 28;340(6140):1235970
pubmed: 23812721
Science. 2008 Nov 7;322(5903):953-6
pubmed: 18988853
Nat Protoc. 2007;2(11):2728-33
pubmed: 18007608
RNA. 2014 May;20(5):609-20
pubmed: 24667215
Nat Methods. 2007 Jan;4(1):27-9
pubmed: 17179934
J Comput Chem. 2004 Oct;25(13):1605-12
pubmed: 15264254
Elife. 2018 Mar 07;7:
pubmed: 29513216
Methods. 2018 Mar 15;137:55-66
pubmed: 29247757
Science. 2006 Sep 29;313(5795):1935-42
pubmed: 16959973
J Mol Biol. 2002 Mar 15;317(1):41-72
pubmed: 11916378
Acta Crystallogr D Biol Crystallogr. 2010 Jan;66(Pt 1):12-21
pubmed: 20057044
Annu Rev Biophys. 2010;39:227-44
pubmed: 20192776
Mol Cell. 2008 Oct 24;32(2):190-7
pubmed: 18951087
Nat Struct Mol Biol. 2007 Aug;14(8):727-32
pubmed: 17660832
Biochemistry. 2009 Dec 1;48(47):11178-84
pubmed: 19874047
Nature. 1967 Feb 4;213(5075):449-50
pubmed: 6032223
Cell. 2006 Sep 22;126(6):1065-77
pubmed: 16962654
Nucleic Acids Res. 2007;35(4):1343-53
pubmed: 17272297
Elife. 2013 Jun 04;2:e00411
pubmed: 23755360
Cell Rep. 2016 Sep 27;17(1):11-18
pubmed: 27681416
Nature. 2011 Jul 31;476(7360):351-4
pubmed: 21804565
J Struct Biol. 2013 Sep;183(3):377-388
pubmed: 23872434
EMBO J. 1997 Jul 1;16(13):4126-33
pubmed: 9233821
Nucleic Acids Res. 2007;35(15):5130-40
pubmed: 17660192
Structure. 2016 Dec 6;24(12):2092-2101
pubmed: 27818103
Mol Cell. 2002 Oct;10(4):789-98
pubmed: 12419223
EMBO J. 2010 Aug 4;29(15):2577-85
pubmed: 20588254
J Mol Biol. 2008 Mar 7;376(5):1334-47
pubmed: 18234219
Cell. 2007 Jun 1;129(5):929-41
pubmed: 17540173
RNA. 2011 Aug;17(8):1409-21
pubmed: 21700725
Nat Commun. 2019 Jun 12;10(1):2579
pubmed: 31189921
Structure. 2013 Jul 2;21(7):1258-63
pubmed: 23769667
Science. 2011 May 20;332(6032):981-4
pubmed: 21596992
Elife. 2016 May 09;5:
pubmed: 27159452
Nat Struct Mol Biol. 2017 Sep;24(9):752-757
pubmed: 28741611
J Mol Biol. 2007 Jul 13;370(3):530-40
pubmed: 17512008
Proc Natl Acad Sci U S A. 2008 Dec 16;105(50):19684-9
pubmed: 19064930
Wiley Interdiscip Rev RNA. 2016 Sep;7(5):620-36
pubmed: 27117863
Nature. 2003 Jan 2;421(6918):90-4
pubmed: 12511961
Annu Rev Microbiol. 2008;62:353-73
pubmed: 18544041
Nature. 1989 Nov 9;342(6246):142-8
pubmed: 2682263
Nat Struct Mol Biol. 2013 Sep;20(9):1077-84
pubmed: 23912278
Proc Natl Acad Sci U S A. 1994 Jun 21;91(13):5848-52
pubmed: 8016077
J Mol Biol. 2018 Mar 2;430(5):591-593
pubmed: 29366636
Acta Crystallogr D Biol Crystallogr. 2002 May;58(Pt 5):761-7
pubmed: 11976486
Proc Natl Acad Sci U S A. 1967 Sep;58(3):1144-51
pubmed: 5233840
Proc Natl Acad Sci U S A. 2010 May 11;107(19):8593-8
pubmed: 20421507
Nat Struct Mol Biol. 2010 Apr;17(4):465-70
pubmed: 20208546
Mol Cell. 2003 Jan;11(1):103-12
pubmed: 12535525
Mol Cell. 2001 Dec;8(6):1375-82
pubmed: 11779511
Nat Struct Mol Biol. 2017 Dec 7;24(12):1021-1027
pubmed: 29215639
Nature. 1965 Jun 5;206(988):994-8
pubmed: 5320272
Proc Natl Acad Sci U S A. 1994 Jun 21;91(13):5798-802
pubmed: 8016068
J Cell Biol. 2000 Aug 7;150(3):447-60
pubmed: 10931859
Elife. 2018 Jun 11;7:
pubmed: 29889659
EMBO J. 2000 Dec 15;19(24):6900-7
pubmed: 11118225
Proc Natl Acad Sci U S A. 2013 Dec 24;110(52):20994-9
pubmed: 24324137
Proc Natl Acad Sci U S A. 1968 Oct;61(2):768-74
pubmed: 4879404
Nature. 2017 Jun 1;546(7656):113-117
pubmed: 28538735
J Mol Biol. 2016 May 22;428(10 Pt B):2228-36
pubmed: 27107638
Sci Rep. 2018 Feb 5;8(1):2349
pubmed: 29403017
RNA. 2012 Feb;18(2):230-40
pubmed: 22187675
Biochem J. 1965 Sep;96(3):671-80
pubmed: 5324303
Mol Genet Genomics. 2015 Aug;290(4):1335-44
pubmed: 25636454
Nature. 2008 Aug 14;454(7206):852-7
pubmed: 18596689
J Struct Biol. 2005 Oct;152(1):36-51
pubmed: 16182563
Structure. 2014 Aug 5;22(8):1210-1218
pubmed: 25043550
Proc Natl Acad Sci U S A. 2012 Apr 17;109(16):6094-9
pubmed: 22467828
J Mol Biol. 2016 Mar 27;428(6):1333-1344
pubmed: 26827724
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21
pubmed: 20124702
Acta Crystallogr D Biol Crystallogr. 2002 Nov;58(Pt 11):1948-54
pubmed: 12393927
Proc Natl Acad Sci U S A. 2011 Sep 20;108(38):15798-803
pubmed: 21903932
Nature. 2003 Jan 2;421(6918):87-90
pubmed: 12511960
Cell. 2011 Jan 7;144(1):143-56
pubmed: 21185072
Cell. 2005 Dec 29;123(7):1255-66
pubmed: 16377566
Science. 2013 Jun 28;340(6140):1235490
pubmed: 23812720
Science. 2009 Oct 30;326(5953):694-9
pubmed: 19833919
Nature. 2010 Jul 15;466(7304):329-33
pubmed: 20631791
J Mol Biol. 2004 Jul 30;341(1):227-39
pubmed: 15312775
Methods Enzymol. 2010;482:295-320
pubmed: 20888966
Nat Commun. 2018 Aug 3;9(1):3053
pubmed: 30076302
J Struct Biol. 2007 Jan;157(1):3-18
pubmed: 17011211
Proc Natl Acad Sci U S A. 2008 Nov 4;105(44):16924-7
pubmed: 18971332
Proc Natl Acad Sci U S A. 2004 Jun 15;101(24):8900-5
pubmed: 15178758
J Biol Chem. 2018 Aug 10;293(32):12472-12479
pubmed: 29941456
Cell Rep. 2017 Jul 5;20(1):161-172
pubmed: 28683310
Science. 2016 Dec 16;354(6318):1437-1440
pubmed: 27934701
Science. 2013 Jun 28;340(6140):1236086
pubmed: 23812722
Proc Natl Acad Sci U S A. 1970 Mar;65(3):702-8
pubmed: 4910855
Nature. 2010 Dec 2;468(7324):713-6
pubmed: 21124459
Nat Struct Mol Biol. 2009 Aug;16(8):861-8
pubmed: 19597483
Cold Spring Harb Perspect Biol. 2018 Sep 4;10(9):
pubmed: 29661790
Nat Struct Mol Biol. 2017 Oct;24(10):866-869
pubmed: 28892042
J Mol Biol. 2006 Apr 7;357(4):1144-53
pubmed: 16476444
Nat Struct Mol Biol. 2014 Sep;21(9):787-93
pubmed: 25132179
Nature. 2000 Jul 20;406(6793):318-22
pubmed: 10917535
Mol Cell. 2005 Nov 23;20(4):623-32
pubmed: 16307925
Biochemistry. 2018 Apr 3;57(13):1954-1966
pubmed: 29499110
J Mol Biol. 2015 May 8;427(9):1848-60
pubmed: 25619162
Elife. 2017 Mar 16;6:
pubmed: 28300532