Inference of the generalized-growth model via maximum likelihood estimation: A reflection on the impact of overdispersion.
Early epidemic growth phase
Generalized-growth model
Maximum likelihood estimation
Overdispersion
Sub-exponential growth
Journal
Journal of theoretical biology
ISSN: 1095-8541
Titre abrégé: J Theor Biol
Pays: England
ID NLM: 0376342
Informations de publication
Date de publication:
07 01 2020
07 01 2020
Historique:
received:
29
01
2019
revised:
15
07
2019
accepted:
26
09
2019
pubmed:
1
10
2019
medline:
22
6
2021
entrez:
1
10
2019
Statut:
ppublish
Résumé
Recently, the generalized-growth model was introduced as a flexible approach to characterize growth dynamics of disease outbreaks during the early ascending phase. In this work, by using classical maximum likelihood estimation to obtain parameter estimates, we evaluate the impact of varying levels of overdispersion on the inference of the growth scaling parameter through comparing Poisson and Negative binomial models. In particular, under exponential and sub-exponential growth scenarios, we evaluate, via simulations, the error rate of making an incorrect characterization of early outbreak growth patterns. Simulation results show that the ability to correctly identify early outbreak growth patterns can be affected by overdispersion even when accounted for using the Negative binomial model. We exemplify our findings using data on five different outbreaks. Overall, our results show that estimates should be interpreted with caution when data are overdispersed.
Identifiants
pubmed: 31568788
pii: S0022-5193(19)30399-6
doi: 10.1016/j.jtbi.2019.110029
pii:
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
110029Informations de copyright
Copyright © 2019 Elsevier Ltd. All rights reserved.