Inference of the generalized-growth model via maximum likelihood estimation: A reflection on the impact of overdispersion.

Early epidemic growth phase Generalized-growth model Maximum likelihood estimation Overdispersion Sub-exponential growth

Journal

Journal of theoretical biology
ISSN: 1095-8541
Titre abrégé: J Theor Biol
Pays: England
ID NLM: 0376342

Informations de publication

Date de publication:
07 01 2020
Historique:
received: 29 01 2019
revised: 15 07 2019
accepted: 26 09 2019
pubmed: 1 10 2019
medline: 22 6 2021
entrez: 1 10 2019
Statut: ppublish

Résumé

Recently, the generalized-growth model was introduced as a flexible approach to characterize growth dynamics of disease outbreaks during the early ascending phase. In this work, by using classical maximum likelihood estimation to obtain parameter estimates, we evaluate the impact of varying levels of overdispersion on the inference of the growth scaling parameter through comparing Poisson and Negative binomial models. In particular, under exponential and sub-exponential growth scenarios, we evaluate, via simulations, the error rate of making an incorrect characterization of early outbreak growth patterns. Simulation results show that the ability to correctly identify early outbreak growth patterns can be affected by overdispersion even when accounted for using the Negative binomial model. We exemplify our findings using data on five different outbreaks. Overall, our results show that estimates should be interpreted with caution when data are overdispersed.

Identifiants

pubmed: 31568788
pii: S0022-5193(19)30399-6
doi: 10.1016/j.jtbi.2019.110029
pii:
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

110029

Informations de copyright

Copyright © 2019 Elsevier Ltd. All rights reserved.

Auteurs

Tapiwa Ganyani (T)

Interuniversity Institute for Biostatistics and statistical Bioinformatics, UHasselt (Hasselt University), Diepenbeek, Belgium. Electronic address: tapiwa.ganyani@uhasselt.be.

Christel Faes (C)

Interuniversity Institute for Biostatistics and statistical Bioinformatics, UHasselt (Hasselt University), Diepenbeek, Belgium.

Niel Hens (N)

Interuniversity Institute for Biostatistics and statistical Bioinformatics, UHasselt (Hasselt University), Diepenbeek, Belgium; Centre for Health Economics Research and Modelling Infectious Diseases, Vaccine and Infectious Disease Institute, University of Antwerp, Antwerp, Belgium.

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