Nearly full-length genome characterization of canine parvovirus strains circulating in Nigeria.
Canine parvovirus
NS1
Nigeria
genome analysis
molecular characterization
protoparvovirus
Journal
Transboundary and emerging diseases
ISSN: 1865-1682
Titre abrégé: Transbound Emerg Dis
Pays: Germany
ID NLM: 101319538
Informations de publication
Date de publication:
Mar 2020
Mar 2020
Historique:
received:
13
07
2019
revised:
19
09
2019
accepted:
20
09
2019
pubmed:
4
10
2019
medline:
21
7
2020
entrez:
4
10
2019
Statut:
ppublish
Résumé
Canine parvovirus type 2 (CPV-2) emerged suddenly in the late 1970s as pathogen of dogs, causing a severe and often fatal gastroenteric disease. The original CPV-2 was replaced by three antigenic variants, CPV-2a, CPV-2b and CPV-2c, which to date have gained a worldwide distribution with different relative proportions. All previous studies conducted in Africa were based on partial VP2 gene sequences. The aim of this study was to provide a genome analysis to characterize the CPV strains collected in Nigeria, Africa. Rectal swab samples (n = 320) were collected in 2018 and tested by means of an immunochromatographic assay. Among the 144 positive samples, 59 were selected for further analyses using different molecular assays. The results revealed a high prevalence of CPV-2c (91.5%) compared to the CPV-2a variant (8.5%). The VP2 gene sequences showed a divergence from the strains analysed in 2010 in Nigeria and a closer connection with CPV strains of Asian origin. The non-structural gene analysis evidenced amino acid changes never previously reported. The molecular analysis based on genomic sequences evidenced a geographical pattern of distribution of the analysed strains, suggesting a potential common evolutionary origin with CPV of Asian origin. This study represents the first CPV molecular characterization including all the encoding gene sequences conducted in the African continent and contributes to define the current geographical spread of the CPV variants worldwide.
Identifiants
pubmed: 31580520
doi: 10.1111/tbed.13379
pmc: PMC7168533
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
635-647Subventions
Organisme : Ministero della Salute
ID : Ricerca Corrente IZS SI 03/18 RC "Studio del potenziale zoonosico e caratterizzazione genomica dei virus enterici del cane"
Informations de copyright
© 2019 Blackwell Verlag GmbH.
Références
Transbound Emerg Dis. 2019 Mar;66(2):897-907
pubmed: 30536738
J Virol Methods. 2006 Sep;136(1-2):171-6
pubmed: 16750863
J Virol Methods. 2004 Aug;119(2):145-50
pubmed: 15158596
J Virol. 1988 Jan;62(1):266-76
pubmed: 2824850
Virology. 2009 Mar 1;385(1):5-10
pubmed: 19144369
J Clin Microbiol. 1996 Sep;34(9):2101-5
pubmed: 8862565
PLoS One. 2015 Sep 08;10(9):e0137288
pubmed: 26348721
Vet J. 2013 Nov;198(2):504-7
pubmed: 24100133
Arch Virol. 2019 Jan;164(1):303-307
pubmed: 30311077
Vet Rec Open. 2016 Nov 17;3(1):e000198
pubmed: 27933190
Arch Microbiol. 2017 May;199(4):543-549
pubmed: 27888321
Viral Immunol. 2017 Jun;30(5):371-376
pubmed: 28414634
Mol Biol Evol. 2018 Jun 1;35(6):1547-1549
pubmed: 29722887
Vet Microbiol. 2013 Aug 30;165(3-4):460-5
pubmed: 23725746
Arch Virol. 2014 May;159(5):1239-47
pubmed: 24212889
Science. 1985 Nov 29;230(4729):1046-8
pubmed: 4059921
J Virol. 2010 May;84(10):5391-403
pubmed: 20219935
J Gen Virol. 2016 Sep;97(9):2043-2057
pubmed: 27389721
Virology. 2007 May 10;361(2):283-93
pubmed: 17217977
Onderstepoort J Vet Res. 1998 Dec;65(4):239-42
pubmed: 10192835
J Virol Methods. 2016 Aug;234:1-6
pubmed: 27040113
Virus Evol. 2018 Apr 09;4(1):vey011
pubmed: 29657837
J Virol. 1991 Dec;65(12):6544-52
pubmed: 1942246
Res Vet Sci. 2007 Oct;83(2):269-73
pubmed: 17197003
Virus Genes. 2009 Apr;38(2):249-58
pubmed: 19112611
Vet Microbiol. 2006 Sep 10;116(4):301-9
pubmed: 16730927
J Virol Methods. 2006 Apr;133(1):92-9
pubmed: 16313976
Transbound Emerg Dis. 2018 Feb;65(1):16-21
pubmed: 29134762
J Gen Virol. 2019 Mar;100(3):367-368
pubmed: 30672729
Science. 1991 Mar 22;251(5000):1456-64
pubmed: 2006420
PLoS Pathog. 2012;8(5):e1002666
pubmed: 22570610
Virol J. 2016 Sep 23;13(1):160
pubmed: 27663840
Transbound Emerg Dis. 2020 Mar;67(2):635-647
pubmed: 31580520
Afr J Infect Dis. 2017 Nov 15;12(1):28-32
pubmed: 29302647
Epidemiol Infect. 1998 Oct;121(2):433-40
pubmed: 9825797
Infect Genet Evol. 2016 Jul;41:201-206
pubmed: 27083072
Vet Microbiol. 2017 May;204:54-58
pubmed: 28532806
Virusdisease. 2018 Sep;29(3):411-415
pubmed: 30159381
J Immunoassay Immunochem. 2016;37(1):16-28
pubmed: 25891124
Transbound Emerg Dis. 2016 Apr;63(2):e262-9
pubmed: 25209922
Transbound Emerg Dis. 2017 Apr;64(2):495-503
pubmed: 26190701
Transbound Emerg Dis. 2019 Nov;66(6):2297-2304
pubmed: 31254456
Infect Genet Evol. 2017 Nov;55:205-208
pubmed: 28935611
Viruses. 2019 Mar 29;11(4):
pubmed: 30934948
Vet Microbiol. 2012 Feb 24;155(1):1-12
pubmed: 21962408
Vet Ital. 2018 Sep 30;54(3):225-236
pubmed: 30575000
BMC Vet Res. 2014 Apr 23;10:91
pubmed: 24755118
Virol J. 2013 May 26;10:163
pubmed: 23706032
PLoS One. 2014 Nov 03;9(11):e111779
pubmed: 25365348
J Gen Virol. 2001 Jul;82(Pt 7):1555-1560
pubmed: 11413365
Proc Natl Acad Sci U S A. 2005 Jan 11;102(2):379-84
pubmed: 15626758
PLoS One. 2017 Mar 31;12(3):e0175035
pubmed: 28362831
Vet J. 2013 Jun;196(3):555-7
pubmed: 23375346
J Comput Biol. 2000 Feb-Apr;7(1-2):203-14
pubmed: 10890397
J Vet Med B Infect Dis Vet Public Health. 2005 Sep-Oct;52(7-8):316-9
pubmed: 16316391
Infect Genet Evol. 2018 Jul;61:67-73
pubmed: 29548803
Emerg Infect Dis. 2007 Aug;13(8):1222-4
pubmed: 17953097
J Med Virol. 2008 Aug;80(8):1489-96
pubmed: 18551614
Curr Opin Microbiol. 2003 Aug;6(4):392-8
pubmed: 12941411
J Gen Virol. 2008 Sep;89(Pt 9):2280-2289
pubmed: 18753238
J Virol. 2003 Feb;77(3):1718-26
pubmed: 12525605
Infect Genet Evol. 2016 Mar;38:73-78
pubmed: 26692471
Transbound Emerg Dis. 2015 Feb;62(1):91-5
pubmed: 23506473