Fast Microsecond Dynamics of the Protein-Water Network in the Active Site of Human Carbonic Anhydrase II Studied by Solid-State NMR Spectroscopy.


Journal

Journal of the American Chemical Society
ISSN: 1520-5126
Titre abrégé: J Am Chem Soc
Pays: United States
ID NLM: 7503056

Informations de publication

Date de publication:
11 12 2019
Historique:
pubmed: 28 10 2019
medline: 28 10 2020
entrez: 25 10 2019
Statut: ppublish

Résumé

Protein-water interactions have widespread effects on protein structure and dynamics. As such, the function of many biomacromolecules can be directly related to the presence and exchange of water molecules. While the presence of structural water sites can be easily detected by X-ray crystallography, the dynamics within functional water-protein network architectures is largely elusive. Here we use solid-state NMR relaxation dispersion measurements with a focus on those active-site residues in the enzyme human carbonic anhydrase II (hCAII) that constitute the evolutionarily conserved water pocket, key for CAs' enzymatic catalysis. Together with chemical shifts, peak broadening, and results of molecular dynamics (MD) and DFT shift calculations, the relaxation dispersion data suggest the presence of a widespread fast μs-time-scale dynamics in the pocket throughout the protein-water network. This process is abrogated in the presence of an inhibitor which partially disrupts the network. The time scale of the protein-water pocket motion coincides both with the estimated residence time of Zn-bound water/OH

Identifiants

pubmed: 31647225
doi: 10.1021/jacs.9b05311
doi:

Substances chimiques

Water 059QF0KO0R
Carbonic Anhydrase II EC 4.2.1.-
CA2 protein, human EC 4.2.1.1

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

19276-19288

Auteurs

Himanshu Singh (H)

Faculty of Chemistry and Chemical Biology , Technical University Dortmund , Otto-Hahn-Straße 4a , 44227 Dortmund , Germany.
Department of Chemistry , Ludwig-Maximilians-University Munich , Butenandtstraße 5-13 , 81377 Munich , Germany.

Suresh K Vasa (SK)

Faculty of Chemistry and Chemical Biology , Technical University Dortmund , Otto-Hahn-Straße 4a , 44227 Dortmund , Germany.
Department of Chemistry , Ludwig-Maximilians-University Munich , Butenandtstraße 5-13 , 81377 Munich , Germany.

Harish Jangra (H)

Department of Chemistry , Ludwig-Maximilians-University Munich , Butenandtstraße 5-13 , 81377 Munich , Germany.

Petra Rovó (P)

Department of Chemistry , Ludwig-Maximilians-University Munich , Butenandtstraße 5-13 , 81377 Munich , Germany.

Christopher Päslack (C)

Theoretical Chemistry , Ruhr University Bochum , Universitätsstraße 150 , 44801 Bochum , Germany.

Chandan K Das (CK)

Theoretical Chemistry , Ruhr University Bochum , Universitätsstraße 150 , 44801 Bochum , Germany.

Hendrik Zipse (H)

Department of Chemistry , Ludwig-Maximilians-University Munich , Butenandtstraße 5-13 , 81377 Munich , Germany.

Lars V Schäfer (LV)

Theoretical Chemistry , Ruhr University Bochum , Universitätsstraße 150 , 44801 Bochum , Germany.

Rasmus Linser (R)

Faculty of Chemistry and Chemical Biology , Technical University Dortmund , Otto-Hahn-Straße 4a , 44227 Dortmund , Germany.
Department of Chemistry , Ludwig-Maximilians-University Munich , Butenandtstraße 5-13 , 81377 Munich , Germany.

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Classifications MeSH