DNA damage and transcription stress cause ATP-mediated redesign of metabolism and potentiation of anti-oxidant buffering.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
25 10 2019
Historique:
received: 21 10 2018
accepted: 22 09 2019
entrez: 27 10 2019
pubmed: 28 10 2019
medline: 12 2 2020
Statut: epublish

Résumé

Accumulation of DNA lesions causing transcription stress is associated with natural and accelerated aging and culminates with profound metabolic alterations. Our understanding of the mechanisms governing metabolic redesign upon genomic instability, however, is highly rudimentary. Using Ercc1-defective mice and Xpg knock-out mice, we demonstrate that combined defects in transcription-coupled DNA repair (TCR) and in nucleotide excision repair (NER) directly affect bioenergetics due to declined transcription, leading to increased ATP levels. This in turn inhibits glycolysis allosterically and favors glucose rerouting through the pentose phosphate shunt, eventually enhancing production of NADPH-reducing equivalents. In NER/TCR-defective mutants, augmented NADPH is not counterbalanced by increased production of pro-oxidants and thus pentose phosphate potentiation culminates in an over-reduced redox state. Skin fibroblasts from the TCR disease Cockayne syndrome confirm results in animal models. Overall, these findings unravel a mechanism connecting DNA damage and transcriptional stress to metabolic redesign and protective antioxidant defenses.

Identifiants

pubmed: 31653834
doi: 10.1038/s41467-019-12640-5
pii: 10.1038/s41467-019-12640-5
pmc: PMC6814737
doi:

Substances chimiques

Antioxidants 0
DNA excision repair protein ERCC-5 0
DNA-Binding Proteins 0
Nuclear Proteins 0
Transcription Factors 0
NADP 53-59-8
Adenosine Triphosphate 8L70Q75FXE
Endonucleases EC 3.1.-
Ercc1 protein, mouse EC 3.1.-

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

4887

Références

Sci Transl Med. 2016 Mar 23;8(331):331ra38
pubmed: 27009267
Adv Drug Deliv Rev. 2009 Nov 30;61(14):1283-98
pubmed: 19716388
Nature. 2006 Jun 22;441(7096):1011-4
pubmed: 16791200
Aging Cell. 2012 Aug;11(4):714-6
pubmed: 22530741
Methods Cell Biol. 1976;13:29-83
pubmed: 177845
FASEB J. 2000 Jun;14(9):1073-82
pubmed: 10834928
DNA Repair (Amst). 2013 Aug;12(8):568-77
pubmed: 23726220
ACS Chem Neurosci. 2013 Jul 17;4(7):1123-32
pubmed: 23672460
Proc Natl Acad Sci U S A. 2008 Oct 14;105(41):15779-84
pubmed: 18840688
PLoS Biol. 2007 Jan;5(1):e2
pubmed: 17326724
Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3059-64
pubmed: 19223593
Proc Natl Acad Sci U S A. 2000 Apr 11;97(8):3832-7
pubmed: 10759556
Ann Neurol. 2011 Mar;69(3):509-20
pubmed: 21446024
Ann N Y Acad Sci. 2000;899:191-208
pubmed: 10863540
Nat Rev Mol Cell Biol. 2014 Jul;15(7):465-81
pubmed: 24954209
Mech Ageing Dev. 1978 Dec;8(6):383-95
pubmed: 739799
Nat Cell Biol. 2009 May;11(5):604-15
pubmed: 19363488
Annu Rev Biochem. 1971;40:811-26
pubmed: 4330582
Proc Natl Acad Sci U S A. 2018 Jul 17;115(29):E6770-E6779
pubmed: 29967171
J Invest Dermatol. 2002 Feb;118(2):344-51
pubmed: 11841555
Cell. 2005 Jun 17;121(6):913-23
pubmed: 15960978
Free Radic Biol Med. 2008 Apr 15;44(8):1493-505
pubmed: 18258207
EMBO Mol Med. 2010 Oct;2(10):415-27
pubmed: 20878914
Am J Physiol Cell Physiol. 2001 Dec;281(6):C1776-84
pubmed: 11698235
Mol Med Today. 1999 May;5(5):216-24
pubmed: 10322314
Free Radic Biol Med. 2010 Jul 1;49(1):9-21
pubmed: 20363317
J Bacteriol. 2009 Feb;191(3):1083-91
pubmed: 19028899
PLoS One. 2010 Aug 23;5(8):e12333
pubmed: 20808797
Nat Rev Mol Cell Biol. 2010 Jul;11(7):479-89
pubmed: 20551964
Neurotherapeutics. 2016 Jan;13(1):217-25
pubmed: 26572666
Nature. 2006 Dec 21;444(7122):1038-43
pubmed: 17183314
Proc Natl Acad Sci U S A. 2004 Apr 27;101(17):6582-6
pubmed: 15087501
Nat Rev Rheumatol. 2017 May;13(5):291-301
pubmed: 28360422
Proc Natl Acad Sci U S A. 1997 Apr 1;94(7):3116-21
pubmed: 9096355
Annu Rev Genet. 1978;12:329-63
pubmed: 371526
Mutat Res. 2001 Mar 7;485(2):93-105
pubmed: 11182541
Hepatology. 2012 Feb;55(2):609-21
pubmed: 21953681
Life Sci. 1982 Aug 16;31(7):605-13
pubmed: 6182438
EMBO J. 2011 Feb 2;30(3):546-55
pubmed: 21157431
Aging Cell. 2012 Jun;11(3):520-9
pubmed: 22404840
Cell Death Dis. 2018 Jul 26;9(8):818
pubmed: 30050065
Methods Enzymol. 1994;233:346-57
pubmed: 8015469
PLoS Genet. 2008 Aug 15;4(8):e1000161
pubmed: 18704162
PLoS Genet. 2014 Oct 09;10(10):e1004686
pubmed: 25299392
Biochim Biophys Acta. 2009 Aug;1794(8):1175-80
pubmed: 19250982
Biochim Biophys Acta. 2012 Dec;1826(2):423-33
pubmed: 22841746
Free Radic Biol Med. 2008 Oct 1;45(7):971-81
pubmed: 18620047
Cell Rep. 2016 May 31;15(9):1866-75
pubmed: 27210754
N Engl J Med. 2009 Oct 8;361(15):1475-85
pubmed: 19812404
J Biol Chem. 1991 Aug 25;266(24):15675-8
pubmed: 1831450
Mutat Res. 1979 Aug;62(1):183-90
pubmed: 492197
Antonie Van Leeuwenhoek. 1973;39(3):545-65
pubmed: 4148026
Curr Biol. 1997 Jun 1;7(6):427-39
pubmed: 9197240
Cell. 2011 Apr 29;145(3):435-46
pubmed: 21529715
Cell. 2007 Aug 10;130(3):427-39
pubmed: 17693254
Cell. 2016 Aug 11;166(4):802-821
pubmed: 27518560
J Mol Biol. 2015 Aug 14;427(16):2586-2594
pubmed: 26150063
J Biol Chem. 2012 Aug 31;287(36):30444-54
pubmed: 22730407
Nature. 2016 Sep 15;537(7620):427-431
pubmed: 27556946
Nucleic Acids Res. 2015 Mar 11;43(5):2744-56
pubmed: 25722371
Annu Rev Genet. 2015;49:553-75
pubmed: 26631516
PLoS One. 2010 Jan 19;5(1):e8762
pubmed: 20098733
J Biol Chem. 2000 Jul 21;275(29):22355-62
pubmed: 10801836
Neurogenetics. 2013 Feb;14(1):43-51
pubmed: 23224214
Immunity. 2016 Oct 18;45(4):903-916
pubmed: 27742546
Antioxid Redox Signal. 2018 Jan 1;28(1):44-61
pubmed: 28816057
Antioxid Redox Signal. 2011 Aug 15;15(4):855-71
pubmed: 21395478
J Cell Biol. 1998 Jul 27;142(2):365-76
pubmed: 9679137
Exp Gerontol. 2011 Feb-Mar;46(2-3):148-54
pubmed: 21167272
Am J Hum Genet. 1993 Jul;53(1):185-92
pubmed: 8317483
Annu Rev Pharmacol Toxicol. 2016;56:427-45
pubmed: 26514200
Chem Rev. 2006 Feb;106(2):253-76
pubmed: 16464005
JAMA Pediatr. 2015 Aug;169(8):778-82
pubmed: 26075348
J Biol. 2007 Dec 21;6(4):10
pubmed: 18154684
Mol Cell. 2003 Jul;12(1):125-34
pubmed: 12887898
Cell Metab. 2014 Dec 2;20(6):967-77
pubmed: 25456739
Hepatology. 2003 Oct;38(4):958-66
pubmed: 14512883
Biol Rev Camb Philos Soc. 2015 Aug;90(3):927-63
pubmed: 25243985
Am J Hum Genet. 2015 Feb 5;96(2):194-207
pubmed: 25620205
Trends Genet. 2008 Jun;24(6):280-8
pubmed: 18457900

Auteurs

Chiara Milanese (C)

Department of Molecular Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands.

Cíntia R Bombardieri (CR)

Department of Molecular Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands.

Sara Sepe (S)

Department of Molecular Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands.

Sander Barnhoorn (S)

Department of Molecular Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands.

César Payán-Goméz (C)

Department of Molecular Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands.
Facultad de Ciencias Naturales y Matemáticas, Universidad del Rosario, Bogotá, Colombia.

Donatella Caruso (D)

Department of Pharmacological and Biomolecular Sciences, University of Milan, Milan, Italy.

Matteo Audano (M)

Department of Pharmacological and Biomolecular Sciences, University of Milan, Milan, Italy.

Silvia Pedretti (S)

Department of Pharmacological and Biomolecular Sciences, University of Milan, Milan, Italy.

Wilbert P Vermeij (WP)

Princess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.

Renata M C Brandt (RMC)

Department of Molecular Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands.

Akos Gyenis (A)

Department of Molecular Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands.
Cologne Excellence Cluster for Cellular Stress Responses in Ageing-Associated Diseases (CECAD) and Systems Biology of Ageing Cologne, University of Cologne, Cologne, Germany.

Mirjam M Wamelink (MM)

Department of Clinical Chemistry, VU University Medical Center, Amsterdam, the Netherlands.

Annelieke S de Wit (AS)

Department of Molecular Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands.

Roel C Janssens (RC)

Department of Molecular Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands.

René Leen (R)

Laboratory of Genetic Metabolic Diseases, Academic Medical Center, Amsterdam, the Netherlands.

André B P van Kuilenburg (ABP)

Laboratory of Genetic Metabolic Diseases, Academic Medical Center, Amsterdam, the Netherlands.

Nico Mitro (N)

Department of Pharmacological and Biomolecular Sciences, University of Milan, Milan, Italy.

Jan H J Hoeijmakers (JHJ)

Department of Molecular Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands.
Princess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.
Cologne Excellence Cluster for Cellular Stress Responses in Ageing-Associated Diseases (CECAD) and Systems Biology of Ageing Cologne, University of Cologne, Cologne, Germany.
Oncode Institute, Princess Máxima Center, Utrecht, Netherlands.

Pier G Mastroberardino (PG)

Department of Molecular Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands. p.g.mastroberardino@erasmusmc.nl.
Department of Life, Health and Environmental Sciences, University of L'Aquila, L'Aquila, Italy. p.g.mastroberardino@erasmusmc.nl.

Articles similaires

Robotic Surgical Procedures Animals Humans Telemedicine Models, Animal

Odour generalisation and detection dog training.

Lyn Caldicott, Thomas W Pike, Helen E Zulch et al.
1.00
Animals Odorants Dogs Generalization, Psychological Smell
Animals TOR Serine-Threonine Kinases Colorectal Neoplasms Colitis Mice
Animals Tail Swine Behavior, Animal Animal Husbandry

Classifications MeSH