Biodiversity of protists and nematodes in the wild nonhuman primate gut.
Animals
Animals, Wild
/ microbiology
Biodiversity
Blastocyst
/ classification
Cercopithecidae
/ microbiology
Ciliophora
/ classification
Diet
Endolimax
/ classification
Entamoeba
/ classification
Eukaryota
/ classification
Feces
/ microbiology
Fungi
/ classification
Gastrointestinal Microbiome
Hominidae
/ microbiology
Host Specificity
Lemur
/ microbiology
Metagenomics
Nematoda
/ classification
Phylogeny
Platyrrhini
/ microbiology
Primates
/ microbiology
Journal
The ISME journal
ISSN: 1751-7370
Titre abrégé: ISME J
Pays: England
ID NLM: 101301086
Informations de publication
Date de publication:
02 2020
02 2020
Historique:
received:
16
05
2019
accepted:
29
09
2019
revised:
09
08
2019
pubmed:
14
11
2019
medline:
16
4
2020
entrez:
14
11
2019
Statut:
ppublish
Résumé
Documenting the natural diversity of eukaryotic organisms in the nonhuman primate (NHP) gut is important for understanding the evolution of the mammalian gut microbiome, its role in digestion, health and disease, and the consequences of anthropogenic change on primate biology and conservation. Despite the ecological significance of gut-associated eukaryotes, little is known about the factors that influence their assembly and diversity in mammals. In this study, we used an 18S rRNA gene fragment metabarcoding approach to assess the eukaryotic assemblage of 62 individuals representing 16 NHP species. We find that cercopithecoids, and especially the cercopithecines, have substantially higher alpha diversity than other NHP groups. Gut-associated protists and nematodes are widespread among NHPs, consistent with their ancient association with NHP hosts. However, we do not find a consistent signal of phylosymbiosis or host-species specificity. Rather, gut eukaryotes are only weakly structured by primate phylogeny with minimal signal from diet, in contrast to previous reports of NHP gut bacteria. The results of this study indicate that gut-associated eukaryotes offer different information than gut-associated bacteria and add to our understanding of the structure of the gut microbiome.
Identifiants
pubmed: 31719654
doi: 10.1038/s41396-019-0551-4
pii: 10.1038/s41396-019-0551-4
pmc: PMC6976604
doi:
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
609-622Subventions
Organisme : FIC NIH HHS
ID : R01 TW009237
Pays : United States
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