A mini review of xylanolytic enzymes with regards to their synergistic interactions during hetero-xylan degradation.


Journal

World journal of microbiology & biotechnology
ISSN: 1573-0972
Titre abrégé: World J Microbiol Biotechnol
Pays: Germany
ID NLM: 9012472

Informations de publication

Date de publication:
14 Nov 2019
Historique:
received: 29 08 2019
accepted: 06 11 2019
entrez: 16 11 2019
pubmed: 16 11 2019
medline: 22 1 2020
Statut: epublish

Résumé

This review examines the recent models describing the mode of action of various xylanolytic enzymes and how these enzymes can be applied (sequentially or simultaneously) with their distinctive roles in mind to achieve efficient xylan degradation. With respect to homeosynergy, synergism appears to be as a result of β-xylanase and/or oligosaccharide reducing-end β-xylanase liberating xylo-oligomers (XOS) that are preferred substrates of the processive β-xylosidase. With regards to hetero-synergism, two cross relationships appear to exist and seem to be the reason for synergism between the enzymes during xylan degradation. These cross relations are the debranching enzymes such as α-glucuronidase or side-chain cleaving enzymes such as carbohydrate esterases (CE) removing decorations that would have hindered back-bone-cleaving enzymes, while backbone-cleaving-enzymes liberate XOS that are preferred substrates of the debranching and side-chain-cleaving enzymes. This interaction is demonstrated by high yields in co-production of xylan substituents such as arabinose, glucuronic acid and ferulic acid, and XOS. Finally, lytic polysaccharide monooxygenases (LPMO) have also been implicated in boosting whole lignocellulosic biomass or insoluble xylan degradation by glycoside hydrolases (GH) by possibly disrupting entangled xylan residues. Since it has been observed that the same enzyme (same Enzyme Commission, EC, classification) from different GH or CE and/or AA families can display different synergistic interactions with other enzymes due to different substrate specificities and properties, in this review, we propose an approach of enzyme selection (and mode of application thereof) during xylan degradation, as this can improve the economic viability of the degradation of xylan for producing precursors of value added products.

Identifiants

pubmed: 31728656
doi: 10.1007/s11274-019-2765-z
pii: 10.1007/s11274-019-2765-z
doi:

Substances chimiques

Coumaric Acids 0
Oligosaccharides 0
Polysaccharides 0
Xylans 0
Glucuronic Acid 8A5D83Q4RW
ferulic acid AVM951ZWST
Arabinose B40ROO395Z
Esterases EC 3.1.-
Glycoside Hydrolases EC 3.2.1.-
Xylosidases EC 3.2.1.-
alpha-glucuronidase EC 3.2.1.139
exo-1,4-beta-D-xylosidase EC 3.2.1.37
Endo-1,4-beta Xylanases EC 3.2.1.8

Types de publication

Journal Article Review

Langues

eng

Sous-ensembles de citation

IM

Pagination

187

Subventions

Organisme : Rhodes University
ID : Sandisa Imbewu
Organisme : Department of Science and Technology, Republic of South Africa
ID : DST National Biocatalysis Initiative Project
Organisme : National Research Foundation
ID : PhD bursary (Innovation)

Références

Biotechnol Adv. 2016 Nov 15;34(7):1260-1274
pubmed: 27620948
Appl Microbiol Biotechnol. 2017 Feb;101(4):1465-1476
pubmed: 27766358
Bioresour Technol. 2008 Dec;99(18):8981-6
pubmed: 18606539
Annu Rev Plant Biol. 2010;61:263-89
pubmed: 20192742
Fungal Biol. 2013 May;117(5):380-7
pubmed: 23719223
Enzyme Microb Technol. 2015 May;72:16-24
pubmed: 25837503
Appl Environ Microbiol. 2013 Mar;79(6):1990-5
pubmed: 23335774
Biotechnol Biofuels. 2015 Jul 17;8:101
pubmed: 26185526
Enzyme Microb Technol. 2008 Jan;42(2):181-6
pubmed: 22578869
Appl Environ Microbiol. 2016 Aug 15;82(17):5116-24
pubmed: 27316951
Biotechnol Biofuels. 2016 Jan 04;9:2
pubmed: 26734072
Biotechnol Biofuels. 2018 Aug 23;11:229
pubmed: 30159029
Int J Biol Macromol. 2003 Jan 15;31(4-5):171-5
pubmed: 12568925
Biotechnol Adv. 2014 Mar-Apr;32(2):316-32
pubmed: 24239877
Bioresour Technol. 2013 May;135:246-53
pubmed: 23260270
Proc Natl Acad Sci U S A. 2014 Jun 24;111(25):9109-14
pubmed: 24927597
Appl Biochem Biotechnol. 2014 Dec;174(8):2702-10
pubmed: 25224913
Enzyme Microb Technol. 2017 Aug;103:1-11
pubmed: 28554379
Biochim Biophys Acta. 2015 Nov;1850(11):2246-55
pubmed: 26172579
Biotechnol Adv. 2012 Nov-Dec;30(6):1219-27
pubmed: 22138412
Int J Biol Macromol. 2019 Aug 15;135:1098-1106
pubmed: 31173827
Biotechnol Biofuels. 2011 Dec 20;4(1):60
pubmed: 22185437
Sci Rep. 2015 Dec 21;5:18561
pubmed: 26686263
Appl Biochem Biotechnol. 2015 Feb;175(4):1960-70
pubmed: 25432346
Carbohydr Res. 2015 Apr 30;407:16-25
pubmed: 25699975
Enzyme Microb Technol. 2018 Jun;113:75-82
pubmed: 29602390
J Biosci Bioeng. 2015 Apr;119(4):416-20
pubmed: 25300189
Microb Biotechnol. 2018 Sep;11(5):869-880
pubmed: 29697197
Enzyme Microb Technol. 2015 Oct;78:63-73
pubmed: 26215346
J Biotechnol. 2000 Mar 10;78(2):149-61
pubmed: 10725538
Biotechnol Biofuels. 2015 Nov 25;8:187
pubmed: 26609322
Bioresour Technol. 2019 Apr;278:408-423
pubmed: 30704902
ScientificWorldJournal. 2014;2014:298153
pubmed: 25614881
Structure. 2002 Apr;10(4):547-56
pubmed: 11937059
Appl Environ Microbiol. 2007 Aug;73(16):5374-7
pubmed: 17586675
Protein Expr Purif. 2015 Nov;115:132-40
pubmed: 26166179
Nat Chem Biol. 2018 Mar;14(3):306-310
pubmed: 29377002
J Biol Chem. 2014 Nov 14;289(46):32186-200
pubmed: 25266726
Biotechnol Biofuels. 2012 Jul 02;5(1):45
pubmed: 22747961
Carbohydr Res. 2019 Aug 1;482:107738
pubmed: 31280019
Appl Microbiol Biotechnol. 2008 May;79(2):165-78
pubmed: 18385995
Biotechnol Biofuels. 2019 Jul 29;12:190
pubmed: 31384297
PLoS One. 2014 Sep 03;9(9):e106482
pubmed: 25184498
Microb Cell Fact. 2019 Jul 8;18(1):122
pubmed: 31286972
Enzyme Microb Technol. 2019 Mar;122:74-81
pubmed: 30638511
World J Microbiol Biotechnol. 2016 Feb;32(2):34
pubmed: 26754672
Food Chem. 2019 Oct 15;295:653-661
pubmed: 31174809
J Mol Biol. 2017 Aug 4;429(16):2509-2527
pubmed: 28669823
Chemosphere. 2018 Dec;212:24-33
pubmed: 30138852
Biotechnol Adv. 2012 Nov-Dec;30(6):1458-80
pubmed: 22445788
Appl Microbiol Biotechnol. 2015 Oct;99(20):8537-47
pubmed: 25936375
Bioprocess Biosyst Eng. 2018 May;41(5):593-601
pubmed: 29349547
J Biotechnol. 2016 Sep 10;233:228-36
pubmed: 27439201
J Biol Chem. 2014 Jan 3;289(1):53-64
pubmed: 24214982
Sci Rep. 2018 Feb 16;8(1):3195
pubmed: 29453372
Appl Microbiol Biotechnol. 2018 Nov;102(21):9081-9088
pubmed: 30196329
Bioresour Technol. 2008 Sep;99(13):5402-10
pubmed: 18180153
Curr Opin Chem Biol. 2015 Dec;29:108-19
pubmed: 26583519
Carbohydr Polym. 2015 Nov 5;132:452-9
pubmed: 26256370
Biotechnol Biofuels. 2018 Mar 19;11:71
pubmed: 29560026
J Ind Microbiol Biotechnol. 2013 Apr;40(3-4):287-95
pubmed: 23408035
FEBS J. 2014 Sep;281(17):3894-903
pubmed: 25041335
Appl Biochem Biotechnol. 2014 Dec;174(8):2653-62
pubmed: 25213085
Biotechnol Prog. 2009 Mar-Apr;25(2):302-14
pubmed: 19301243
FEBS Lett. 2016 Aug;590(16):2611-8
pubmed: 27397104
Biotechnol Biofuels. 2015 Nov 30;8:197
pubmed: 26628911
Trends Biotechnol. 2015 Dec;33(12):747-761
pubmed: 26472212
Appl Environ Microbiol. 2018 Apr 2;84(8):
pubmed: 29453256
J Appl Microbiol. 2007 Jun;102(6):1586-93
pubmed: 17578424
Enzyme Microb Technol. 2016 Nov;93-94:79-91
pubmed: 27702488
Bioresour Technol. 2019 Apr;277:195-203
pubmed: 30679061
Bioresour Technol. 2010 Dec;101(24):9624-30
pubmed: 20708404
Food Chem. 2014 Apr 1;148:381-7
pubmed: 24262572
J Ind Microbiol Biotechnol. 2003 May;30(5):279-91
pubmed: 12698321
J Bacteriol. 2002 Sep;184(17):4925-9
pubmed: 12169619
Enzyme Microb Technol. 2015 Sep;77:38-45
pubmed: 26138398
FEMS Microbiol Rev. 2005 Jan;29(1):3-23
pubmed: 15652973
Int J Biol Macromol. 2018 Jul 15;114:741-750
pubmed: 29580998
Carbohydr Res. 2004 Oct 20;339(15):2529-40
pubmed: 15476714
Nat Commun. 2017 Oct 20;8(1):1064
pubmed: 29057953
Biotechnol Biofuels. 2019 May 10;12:117
pubmed: 31168322
J Biol Chem. 2004 Jan 23;279(4):3014-24
pubmed: 14573597
Bioresour Technol. 2013 Jan;128:547-52
pubmed: 23211479
J Agric Food Chem. 2016 Jun 22;64(24):4932-42
pubmed: 27285356
J Ind Microbiol Biotechnol. 2013 Oct;40(10):1083-93
pubmed: 23903903

Auteurs

Samkelo Malgas (S)

Enzyme Science Programme (ESP), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown, Eastern Cape, 6140, South Africa.

Mpho S Mafa (MS)

Enzyme Science Programme (ESP), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown, Eastern Cape, 6140, South Africa.
Protein Structure-Function Research Unit (PSFRU), School of Molecular and Cell Biology, Wits University, Johannesburg, Gauteng, 2000, South Africa.

Lithalethu Mkabayi (L)

Enzyme Science Programme (ESP), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown, Eastern Cape, 6140, South Africa.

Brett I Pletschke (BI)

Enzyme Science Programme (ESP), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown, Eastern Cape, 6140, South Africa. b.pletschke@ru.ac.za.

Articles similaires

Animals Dietary Fiber Dextran Sulfate Mice Disease Models, Animal
Animals Flax Chickens Dietary Supplements Endo-1,4-beta Xylanases

Mutational analysis of Phanerochaete chrysosporium´s purine transporter.

Mariana Barraco-Vega, Manuel Sanguinetti, Gabriela da Rosa et al.
1.00
Phanerochaete Fungal Proteins Purines Aspergillus nidulans DNA Mutational Analysis
Substrate Specificity Peptides Catalysis Hydrolysis Protein Conformation

Classifications MeSH