Nano-encapsulated Escherichia coli Divisome Anchor ZipA, and in Complex with FtsZ.


Journal

Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288

Informations de publication

Date de publication:
10 12 2019
Historique:
received: 13 12 2018
accepted: 10 11 2019
entrez: 12 12 2019
pubmed: 12 12 2019
medline: 24 11 2020
Statut: epublish

Résumé

The E. coli membrane protein ZipA, binds to the tubulin homologue FtsZ, in the early stage of cell division. We isolated ZipA in a Styrene Maleic Acid lipid particle (SMALP) preserving its position and integrity with native E. coli membrane lipids. Direct binding of ZipA to FtsZ is demonstrated, including FtsZ fibre bundles decorated with ZipA. Using Cryo-Electron Microscopy, small-angle X-ray and neutron scattering, we determine the encapsulated-ZipA structure in isolation, and in complex with FtsZ to a resolution of 1.6 nm. Three regions can be identified from the structure which correspond to, SMALP encapsulated membrane and ZipA transmembrane helix, a separate short compact tether, and ZipA globular head which binds FtsZ. The complex extends 12 nm from the membrane in a compact structure, supported by mesoscale modelling techniques, measuring the movement and stiffness of the regions within ZipA provides molecular scale analysis and visualisation of the early divisome.

Identifiants

pubmed: 31822696
doi: 10.1038/s41598-019-54999-x
pii: 10.1038/s41598-019-54999-x
pmc: PMC6904479
doi:

Substances chimiques

Bacterial Proteins 0
Carrier Proteins 0
Cell Cycle Proteins 0
Cytoskeletal Proteins 0
Escherichia coli Proteins 0
FtsZ protein, Bacteria 0
Membrane Proteins 0
ZipA protein, E coli 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

18712

Subventions

Organisme : RCUK | Biotechnology and Biological Sciences Research Council (BBSRC)
ID : BB/J017310/1
Pays : International

Références

Trends Microbiol. 2019 Sep;27(9):781-791
pubmed: 31171437
Microbiologyopen. 2016 Oct;5(5):738-752
pubmed: 27167971
J Am Chem Soc. 2009 Jun 10;131(22):7484-5
pubmed: 19449872
Biochem J. 2014 Jul 15;461(2):269-78
pubmed: 24758594
BMC Biotechnol. 2013 May 11;13:41
pubmed: 23663692
Biochemistry. 2015 Jun 23;54(24):3803-13
pubmed: 26031209
J Biol Chem. 2004 Nov 19;279(47):48821-9
pubmed: 15328358
Cytoskeleton (Hoboken). 2012 Oct;69(10):778-90
pubmed: 22888013
J Biol Chem. 2001 Apr 13;276(15):11980-7
pubmed: 11278571
Proteins. 2014 Dec;82(12):3298-311
pubmed: 25174610
Proc Natl Acad Sci U S A. 2016 Aug 23;113(34):E5052-61
pubmed: 27503875
Annu Rev Microbiol. 2003;57:125-54
pubmed: 14527275
Curr Opin Microbiol. 2017 Apr;36:85-94
pubmed: 28254403
Nano Res. 2015 Mar;8(3):774-789
pubmed: 31031888
EMBO J. 1998 Jan 15;17(2):462-9
pubmed: 9430638
Biochem Soc Trans. 2015 Apr;43(2):186-92
pubmed: 25849915
Elife. 2014 Dec 09;3:e04601
pubmed: 25490152
Curr Opin Struct Biol. 2015 Aug;33:103-14
pubmed: 26435463
J Bacteriol. 2009 Dec;191(24):7381-2
pubmed: 19854895
Biophys J. 2000 Mar;78(3):1606-19
pubmed: 10692345
J Struct Biol. 2007 Jan;157(1):38-46
pubmed: 16859925
Mol Microbiol. 2009 May;72(4):895-904
pubmed: 19400776
J Comput Chem. 2004 Oct;25(13):1605-12
pubmed: 15264254
FASEB J. 2013 Aug;27(8):3363-75
pubmed: 23660966
BMC Struct Biol. 2011 Jun 14;11:28
pubmed: 21672257
Nano Lett. 2012 Sep 12;12(9):4687-92
pubmed: 22827450
Mol Microbiol. 1999 Mar;31(6):1853-61
pubmed: 10209756
Cold Spring Harb Perspect Biol. 2010 Jan;2(1):a000331
pubmed: 20182599
Nat Rev Microbiol. 2016 Apr;14(5):305-19
pubmed: 27040757
FEBS Lett. 2010 May 3;584(9):1721-7
pubmed: 19836392
EMBO J. 2000 Jul 3;19(13):3179-91
pubmed: 10880432
Sci Rep. 2015 Dec 08;5:18190
pubmed: 26643979
J Biol Chem. 2012 Aug 31;287(36):30097-104
pubmed: 22787144
Science. 2017 Feb 17;355(6326):739-743
pubmed: 28209898
Nat Cell Biol. 2014 Jan;16(1):38-46
pubmed: 24316672
Biochemistry. 2012 Feb 21;51(7):1407-15
pubmed: 22304478
Mol Microbiol. 2009 Apr;72(2):410-24
pubmed: 19415799
J Biol Chem. 2013 Jul 19;288(29):20830-20836
pubmed: 23740256
Cell. 1997 Jan 24;88(2):175-85
pubmed: 9008158
J Bacteriol. 1996 Jul;178(13):3877-84
pubmed: 8682793
EMBO J. 2010 Apr 21;29(8):1412-22
pubmed: 20300061
Biophys J. 2006 Jun 15;90(12):4651-61
pubmed: 16565040
Proc Natl Acad Sci U S A. 2016 Sep 13;113(37):10412-7
pubmed: 27573843
J Bacteriol. 2012 Oct;194(19):5334-42
pubmed: 22843850
J Struct Biol. 2012 Dec;180(3):531-8
pubmed: 23000704
J Struct Biol. 2011 Feb;173(2):261-70
pubmed: 20854912
J Bacteriol. 2002 Aug;184(15):4313-5
pubmed: 12107152
Science. 2017 Feb 17;355(6326):744-747
pubmed: 28209899
J Bacteriol. 2000 Sep;182(18):5153-66
pubmed: 10960100
Micron. 2012 Feb;43(2-3):116-28
pubmed: 21890365
EMBO J. 1999 May 4;18(9):2372-83
pubmed: 10228152
Nucleic Acids Res. 2016 Jan 4;44(D1):D396-403
pubmed: 26578576
Biochim Biophys Acta. 2012 Mar;1818(3):806-13
pubmed: 22198391
Nat Protoc. 2016 Jul;11(7):1149-62
pubmed: 27254461
J Bacteriol. 2011 Sep;193(18):4973-83
pubmed: 21764913
FEMS Microbiol Rev. 2016 Jan;40(1):57-67
pubmed: 26377318
Nature. 1998 Jan 8;391(6663):203-6
pubmed: 9428770
Biochim Biophys Acta. 2015 Feb;1848(2):496-501
pubmed: 25450810
mBio. 2017 May 2;8(3):
pubmed: 28465423
J Biol Chem. 2013 Feb 1;288(5):3219-26
pubmed: 23233671
mBio. 2013 Jul 16;4(4):
pubmed: 23860769
J Appl Crystallogr. 2009 Apr 1;42(Pt 2):342-346
pubmed: 27630371
EMBO J. 2011 Apr 20;30(8):1425-32
pubmed: 21386816
J Appl Crystallogr. 2012 Mar 15;45(Pt 2):342-350
pubmed: 25484842
Curr Opin Cell Biol. 2001 Feb;13(1):55-60
pubmed: 11163134
Angew Chem Int Ed Engl. 2012 May 7;51(19):4653-7
pubmed: 22473824
J Biol Chem. 2013 Sep 13;288(37):26625-34
pubmed: 23921390

Auteurs

Sarah C Lee (SC)

School of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK. S.lee.5@bham.ac.uk.

Richard Collins (R)

Faculty of Life Sciences, A4032 Michael Smith Building, Oxford Road, Manchester, M13 9PT, UK.

Yu-Pin Lin (YP)

School of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.

Mohammed Jamshad (M)

School of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.

Claire Broughton (C)

School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry, CV4 7AL, UK.

Sarah A Harris (SA)

School of Physics and Astronomy and Astbury Centre for Structural and Molecular Biology, University of Leeds, Leeds, UK.

Benjamin S Hanson (BS)

School of Physics and Astronomy and Astbury Centre for Structural and Molecular Biology, University of Leeds, Leeds, UK.

Cecilia Tognoloni (C)

Department of Chemistry, University of Bath, Claverton Down, Bath, BA2 7AY, UK.

Rosemary A Parslow (RA)

School of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.

Ann E Terry (AE)

MAX IV Laboratory Lund University, P.O. Box 118, SE-221 00, Lund, Sweden.

Alison Rodger (A)

Department of Molecular Sciences, Macquarie University, Macquarie, NSW, 2109, Australia.

Corinne J Smith (CJ)

School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry, CV4 7AL, UK.

Karen J Edler (KJ)

Department of Chemistry, University of Bath, Claverton Down, Bath, BA2 7AY, UK.

Robert Ford (R)

Faculty of Life Sciences, A4032 Michael Smith Building, Oxford Road, Manchester, M13 9PT, UK.

David I Roper (DI)

School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry, CV4 7AL, UK.

Timothy R Dafforn (TR)

School of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK. T.R.Dafforn@bham.ac.uk.

Articles similaires

Photosynthesis Ribulose-Bisphosphate Carboxylase Carbon Dioxide Molecular Dynamics Simulation Cyanobacteria
Animals Humans Sarcomeres Muscle Proteins Carrier Proteins

Conservation of the cooling agent binding pocket within the TRPM subfamily.

Kate Huffer, Matthew C S Denley, Elisabeth V Oskoui et al.
1.00
TRPM Cation Channels Animals Binding Sites Mice Pyrimidinones
Fucosyltransferases Drug Repositioning Molecular Docking Simulation Molecular Dynamics Simulation Humans

Classifications MeSH